Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03200 ATGGTGGAAGATTTGGGTGAATGGAAGGAGGAGGCAATGACTTTTGGAGTCGCTTTCTTTAGGTTCATGGGTTTTTGCACTTTAGGAAAGAGTATCGGAATGGTTGGCCATCTATATGGTTTGTTGTTATCTCGACTATTGGGTGATCTCACATCCAAATGCCGTCTCTTGAGTTGTGACCCTTCAAGGAAAGGATCCAGTGTTTGGTTAGGAACATTTGACAGTGAAATTGATGCTGCTAAGGCTTATGATTGTGCTACTTTCAGAATGAGGGGTCAGAAAGCTATACTGAATTTTCCTTTGGAGGCTGAAGAAGCTAATCCAAAGCCTAATAATAGTGGCAGGAAAAGAAATGACCTCGTCGGTGATGCTCCTATTCCGTTCCGGTTAATGAGAGGGGATTGTGTACAGCAGGTGCTCCGATGCTCAAGTCAGTGTGAGTGTAAAGCAAGACGTTACAAACGCCGAGCAAGTCATCCGTTGACTAAGAGTACGTGTTGTTGTGCTGCTAAGCAATTAGGCCCCGCTCGATGGTCCAAGAGGAGGATTCTCCTCAGTAATTAG 564 0.4486 MVEDLGEWKEEAMTFGVAFFRFMGFCTLGKSIGMVGHLYGLLLSRLLGDLTSKCRLLSCDPSRKGSSVWLGTFDSEIDAAKAYDCATFRMRGQKAILNFPLEAEEANPKPNNSGRKRNDLVGDAPIPFRLMRGDCVQQVLRCSSQCECKARRYKRRASHPLTKSTCCCAAKQLGPARWSKRRILLSN 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03200 187 SUPERFAMILY DNA-binding domain 58 102 IPR016177 GO:0003677
Tsu01g03200 187 ProSiteProfiles AP2/ERF domain profile. 37 100 IPR001471 GO:0003700|GO:0006355
Tsu01g03200 187 CDD AP2 64 100 IPR001471 GO:0003700|GO:0006355
Tsu01g03200 187 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF105 60 143 - -
Tsu01g03200 187 Pfam AP2 domain 63 92 IPR001471 GO:0003700|GO:0006355
Tsu01g03200 187 PANTHER DNA-BINDING DOMAIN 60 143 IPR044808 GO:0003700|GO:0009873
Tsu01g03200 187 SMART rav1_2 55 106 IPR001471 GO:0003700|GO:0006355
Tsu01g03200 187 Gene3D AP2/ERF domain 52 102 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03200 Tsu-Chr1 39445319 39447533 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03200 60 117 AP2-EREBP Transcription Factor Family AT5G07580 63.793 8.62e-21 84.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Tsu01g03200 AP2 5e-05 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03200 - - gmx:100500502 105.145