Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03187 aTGGCGAACAAAGTACATGCTGTGGGAATAGACCTTGGCACAACCTACTCATGTGTTGCAGTATGGCAGGAACAACACAGCAGAGTAGAGATTATTCACAATGATCAAGGCAATAAAACCACTCCTTCTTTTGTTGCTTTCACTCAAGATGATAGGTTGATCGGTAATGCCGCCAAGAATCAAGCTGCTACTAACCCACAAAATACTGTCTTTGATGCTAAGAGGTTGATTGGTAGAAAGTTTTGTGATTCTGTTGTTCAAAAAGATACCATTTTGTGGCCATTCAAAGTCATTGCTGGTTTTAATGATAAACCAATGATTTCCGTTATGTATAAGGGTGAGGAGAAACACCTGTATCCCGAGGAAATTTCATCTATGATCCTCTCAAAGATGCGGGATATTGCAGAGGAATATTTAGAATCACCGGTTAAAAATGCAGTTATCACTGTCCCTGCTTATTTCAATGATTCTCAGCGAAAAGCAACAGTTGATGCTGGTTCCATTGCTGGCCTTAATGTTTTGCGGATAATCAATGAACCTACTGCTGCGGCTATTGCATATGGCCTTGAAAAGAGAGCTGATTGTGTGGGAGAACgaaatatttttgtctttgaCCTTGGTGGTGGGACTTTTGATGTGTCCCTCCTTACAATTAAGGGTAAGGTCTTTGAAGTTAAGGCCACTTCTGGGAACACTCACCTCGGAGGAGAGGACTTTGATTATAGAATGGTGAACTACTTCGCAAAGGAGTTCAAGAGGAAGCATAAGAAGGATATTAGTGAGAACCCAAGAGCTTTGAGGAGGTTGAGAACTGCGTGCGAGAAGGCAAAGCGGGCACTCTCTTTTTCTTCTGTGACTGTGGTTGAGGTAGATTCTTTGTATGATGGAGTTGACTTCTTCTCGTCAATCACTCGTGCCAAGTTTGAGGAAATCAATATGGACTTTTTTAAAGAGTGCATGAGGATTGTTGAAAGTTGTCTTACTGATGCTAAGATGGATAAGAGTAGTGTGCATGATGTTGTCCTTGTTGGAGGGTCTTCTAGGATTCCCAAAGTGCAGCAGTTATTGCGGGCAATTTTCAATGGGAAGGATCTATGCAAGAGCATCAACCCTGATGAGGCTGTTGCTTATGGTGCAGCTGTGCAAGCTGCTTTATTGAGTGATGGCTTTAAGAATGTTCCAGACATGGTGCTGCAAGATGTTACACCATTGTCACTCGGTTGGATGCTAGAAGATGATATTATGGGTGTGGTGATTCCGAGAAACACTTCTATTCCTGTTAAAAGGACAGAAGAATTTTACACGGTTCAAGATAGCCAATCCAGCGTCCTTATTGATGTTTATGAGGGTGAAAGAATGAGGGCAAGCTGCAACAATTTTCTTGGATCTTTTAAACTTTGTGACTTACCCCTTGTTGCTAAAGGACACCCTTTCCATGTATGCTTTGATATTGATCAAAATGGCATCCTAACAGTTTCTGCTATGGAAAAATGGACCGGTAATATGAGTAAGATTACGATAACCAACGAGAAAGGAAGGTTGTCGACCAAAGAAgttgaaaaattgattcaagAAGCCGAGGATTACCGTGTTGAAGATAAGAAATTCTTAAGGAAGGCTGAGTTATTGAATGAATTGGATGAATGCATTTACAAAATGAGAAATGATTTGAATCTCACCTCAGATGAAAATGAGAAGATCAATTCTTTAATTGCAATGGCAGAAAATTTGCTTGATGAGGATCGTCCGCAGATTGGAATAGATTTTCTTGAGGATAATCTAAATAAGATTAAGCGTATGAAAGAGAGCATTATATCCAGGACTCGCTAG 1830 0.3995 MANKVHAVGIDLGTTYSCVAVWQEQHSRVEIIHNDQGNKTTPSFVAFTQDDRLIGNAAKNQAATNPQNTVFDAKRLIGRKFCDSVVQKDTILWPFKVIAGFNDKPMISVMYKGEEKHLYPEEISSMILSKMRDIAEEYLESPVKNAVITVPAYFNDSQRKATVDAGSIAGLNVLRIINEPTAAAIAYGLEKRADCVGERNIFVFDLGGGTFDVSLLTIKGKVFEVKATSGNTHLGGEDFDYRMVNYFAKEFKRKHKKDISENPRALRRLRTACEKAKRALSFSSVTVVEVDSLYDGVDFFSSITRAKFEEINMDFFKECMRIVESCLTDAKMDKSSVHDVVLVGGSSRIPKVQQLLRAIFNGKDLCKSINPDEAVAYGAAVQAALLSDGFKNVPDMVLQDVTPLSLGWMLEDDIMGVVIPRNTSIPVKRTEEFYTVQDSQSSVLIDVYEGERMRASCNNFLGSFKLCDLPLVAKGHPFHVCFDIDQNGILTVSAMEKWTGNMSKITITNEKGRLSTKEVEKLIQEAEDYRVEDKKFLRKAELLNELDECIYKMRNDLNLTSDENEKINSLIAMAENLLDEDRPQIGIDFLEDNLNKIKRMKESIISRTR 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03187 609 Gene3D - 71 126 - -
Tsu01g03187 609 SUPERFAMILY Actin-like ATPase domain 6 191 IPR043129 -
Tsu01g03187 609 PRINTS 70kDa heat shock protein signature 6 19 - -
Tsu01g03187 609 PRINTS 70kDa heat shock protein signature 36 48 - -
Tsu01g03187 609 PRINTS 70kDa heat shock protein signature 58 66 - -
Tsu01g03187 609 PRINTS 70kDa heat shock protein signature 146 166 - -
Tsu01g03187 609 PRINTS 70kDa heat shock protein signature 209 219 - -
Tsu01g03187 609 PRINTS 70kDa heat shock protein signature 337 353 - -
Tsu01g03187 609 PRINTS 70kDa heat shock protein signature 369 389 - -
Tsu01g03187 609 PRINTS 70kDa heat shock protein signature 395 414 - -
Tsu01g03187 609 PRINTS 70kDa heat shock protein signature 475 491 - -
Tsu01g03187 609 ProSitePatterns Heat shock hsp70 proteins family signature 2. 203 216 IPR018181 -
Tsu01g03187 609 Gene3D - 8 384 - -
Tsu01g03187 609 SUPERFAMILY Heat shock protein 70kD (HSP70), peptide-binding domain 392 547 IPR029047 -
Tsu01g03187 609 ProSitePatterns Heat shock hsp70 proteins family signature 3. 340 354 IPR018181 -
Tsu01g03187 609 PANTHER HEAT SHOCK PROTEIN 70KDA 5 607 IPR013126 GO:0005524|GO:0140662
Tsu01g03187 609 SUPERFAMILY Actin-like ATPase domain 198 386 IPR043129 -
Tsu01g03187 609 Gene3D Actin; Chain A, domain 4 235 318 - -
Tsu01g03187 609 ProSitePatterns Heat shock hsp70 proteins family signature 1. 10 17 IPR018181 -
Tsu01g03187 609 PANTHER HEAT SHOCK 70 KDA PROTEIN 5 607 - -
Tsu01g03187 609 Gene3D - 192 366 - -
Tsu01g03187 609 Coils Coil 587 607 - -
Tsu01g03187 609 Pfam Hsp70 protein 7 605 IPR013126 GO:0005524|GO:0140662
Tsu01g03187 609 Gene3D Substrate Binding Domain Of DNAk; Chain A, domain 1 387 568 IPR029047 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03187 Tsu-Chr1 39302728 39305560 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03187 7 593 Calmodulin-binding Proteins AT3G12580 64.686 0.0 777
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03187 K03283 - gmx:102667578 848.966