Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03183 ATGGCAACTAGACTTCAGTTTGAAAATAGTTGTGAAATTGGAGCTTTCTCAAAACTTACCAATGCCTATTGTTTAACTGCCATTGGAGGTTCTGAAAACTTCTACAGTGCATTTGAGGCTGAGTTAGCAGATGTTATCCCTGTGGTCAAAACCTCCATTGGCGGCACTCGTCTTGTTGGTTATCTTCCTGTTGGAAACAAGAACGGACTTTTATTGCCTCATACCACTACAGACCAAGAACTTCAACATCTGAGAAACAGTCTACCTGATCAAGTTACTGTTCAGCGTATAGAAGAAAAATTGTCTGCTCTTGGAAATTGTATAGCATGTAACGACCATGTGGCCCTTGCACACACTGATCTCGACAAGGAAACTGAGGAGTTGATTGCAGATGTTCTTGGAGTTGAAGTTTTCAGGCAGACAGTTGCTGGAAATGTTCTTTCAGGAAGTTACTGTGCTCTGTCCAACAGAGGTGGTTTGGTCCACCCTCATACTTCCATTGAAGACTTGGATGAGCTTTCTACACTTCTTCAAGTTCCTTTGGTTGCTGGGACTGTCAATCGTGGTAGCGAAGCAATAGCTGCTGGCATGGTAGTAAATGATTGGACAGCATTCTGTGGCTCAGACACCACAGCAACAGAGCTCTCTGTGATTGACAGTGTTTTCAAGCTGAGGGGAAACACGGATCCTGgacTCAAGTTTGAGAATTCTTGTGAAGTTGGTGTCTTCTCAAAACTTACTAATGCTTATTGTTTAGTTGCAGTTGGTGGTTCAGAAAATTTCTACAGTACATTTGAGGCTGAGTTATCAGATGTTATCCCTGTCATCAAAACTTCCATTGGTGGCACTCGTATTGTTGGTCGTCTTTGTATCgGAAACAAGAATGGGCTTCTTTTGCCGCATACCACCACAGACCAAGAACTTCAACATTTGAAAAACAGTTTACCTGATCAAGTCCGTGTTCAGCGCATAGAAGAAAAGTTATCTGCTCTGGGTAATTGTATAGCATGTAATGACCATGTGGCCCTCACACACACTGATCTCGACAAGGAAACTGAGGAGGTAGTTGCAGATGTTCTTGGAGTAGAAGTTTTCAGGCAGACAGTTGCCGGTAATATTCTTGTTGGCAGTTACTGCGCTTTCTCCAACAAAGGTGGTTTGGTCCACCCTCATACTTCAGTTGAAGACTTGGATGAACTATCCACACTTCTTCAAGTTCCTTTGGTTGCCGGGACAGTCAACCGTGGTAGCGAAGTAATAGCTGCGGGAATGACAGTCAATGATTGGACAGCGTTTTGTGGTTCAGACACCACAGCTACAGAACTCTCAGTGATTGAAAATGTTTTCAAGCTAAGGGAAGCCAAGCCTAGTGCCATTGTGGATGAGATGAGGAAATCTCTCTTTGATAGCTAA 1413 0.4317 MATRLQFENSCEIGAFSKLTNAYCLTAIGGSENFYSAFEAELADVIPVVKTSIGGTRLVGYLPVGNKNGLLLPHTTTDQELQHLRNSLPDQVTVQRIEEKLSALGNCIACNDHVALAHTDLDKETEELIADVLGVEVFRQTVAGNVLSGSYCALSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEAIAAGMVVNDWTAFCGSDTTATELSVIDSVFKLRGNTDPGLKFENSCEVGVFSKLTNAYCLVAVGGSENFYSTFEAELSDVIPVIKTSIGGTRIVGRLCIGNKNGLLLPHTTTDQELQHLKNSLPDQVRVQRIEEKLSALGNCIACNDHVALTHTDLDKETEEVVADVLGVEVFRQTVAGNILVGSYCAFSNKGGLVHPHTSVEDLDELSTLLQVPLVAGTVNRGSEVIAAGMTVNDWTAFCGSDTTATELSVIENVFKLREAKPSAIVDEMRKSLFDS 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03183 470 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 6 232 470 - -
Tsu01g03183 470 TIGRFAM eIF-6: putative translation initiation factor eIF-6 233 451 IPR002769 GO:0042256|GO:0043022
Tsu01g03183 470 TIGRFAM eIF-6: putative translation initiation factor eIF-6 4 224 IPR002769 GO:0042256|GO:0043022
Tsu01g03183 470 CDD IF6 2 223 IPR002769 GO:0042256|GO:0043022
Tsu01g03183 470 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 6 1 226 - -
Tsu01g03183 470 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 6 232 470 IPR002769 GO:0042256|GO:0043022
Tsu01g03183 470 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 6 1 226 IPR002769 GO:0042256|GO:0043022
Tsu01g03183 470 Pfam eIF-6 family 4 203 IPR002769 GO:0042256|GO:0043022
Tsu01g03183 470 Pfam eIF-6 family 232 430 IPR002769 GO:0042256|GO:0043022
Tsu01g03183 470 Hamap Translation initiation factor 6 [eif6]. 1 221 IPR002769 GO:0042256|GO:0043022
Tsu01g03183 470 SUPERFAMILY Pentein 232 451 - -
Tsu01g03183 470 Hamap Translation initiation factor 6 [eif6]. 217 470 IPR002769 GO:0042256|GO:0043022
Tsu01g03183 470 CDD IF6 232 450 IPR002769 GO:0042256|GO:0043022
Tsu01g03183 470 SUPERFAMILY Pentein 1 224 - -
Tsu01g03183 470 Gene3D - 231 452 - -
Tsu01g03183 470 Gene3D - 1 225 - -
Tsu01g03183 470 SMART eIF6neu2 232 431 IPR002769 GO:0042256|GO:0043022
Tsu01g03183 470 SMART eIF6neu2 3 204 IPR002769 GO:0042256|GO:0043022
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03183 Tsu-Chr1 39232833 39240700 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03183 232 470 Eukaryotic Initiation Factors Gene Family AT3G55620 87.029 2.42e-159 449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03183 K03264 - tut:107362863 668.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g03401 06 44971975 44974867 Tsu01g03183 01 39232833 39240700 PCT