Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03176 ATGGAGAAAAAGATATTAGTGAAATACAAAGAGTGTCTTAAGAACCATGCAGCTTCAATTGGTGGCAATGCAACTGATGGATGTGGTGAGTTCATGTCAAGTGGAGAAAATGACACACTTGAAGCTCTCAAATGTTGTGTTTGCAATTGCCACAGAAATTTCCACAGAAAAGAAATAGAGTCTGATTATTCTCAACATTATGCAATTTCATTGATTCCTGATCATAACATTAATGCACCCTTCTTGGCTCATTTATCTCCACACAACAAAAGTGGATCAACTAGTCCTTCTAATCAATCTTATTATGAGAAAGATTGTATTAAGGACGATGAAAATCGAACCGACAAGATGATAAAGAAGAGGTCTAGAACTAAGTTCAGTAAAGAACAGAAGGAGAAGATGTTGTGTTTTGCAGAAAAGGCAGAGTGGAAGATACAGAAACTAGAAGAATCTGTAGTGCAGAAGTTTTGTCAAGAGATTGGAATCAAGAGAAGAATACTCAAAGTGTGGATGCATAATAATAAGAACACTTTTGCCAAGAGAAATGTTTCTAGTACTAGCTAG 564 0.3582 MEKKILVKYKECLKNHAASIGGNATDGCGEFMSSGENDTLEALKCCVCNCHRNFHRKEIESDYSQHYAISLIPDHNINAPFLAHLSPHNKSGSTSPSNQSYYEKDCIKDDENRTDKMIKKRSRTKFSKEQKEKMLCFAEKAEWKIQKLEESVVQKFCQEIGIKRRILKVWMHNNKNTFAKRNVSSTS 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03176 187 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 8 59 IPR006456 -
Tsu01g03176 187 Gene3D - 106 180 - -
Tsu01g03176 187 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 9 58 IPR006456 -
Tsu01g03176 187 Pfam ZF-HD protein dimerisation region 7 59 IPR006456 -
Tsu01g03176 187 SUPERFAMILY Homeodomain-like 114 180 IPR009057 -
Tsu01g03176 187 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 119 176 IPR006455 -
Tsu01g03176 187 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 2 182 - -
Tsu01g03176 187 PANTHER HOMEOBOX DOMAIN, ZF-HD CLASS PROTEIN 2 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03176 Tsu-Chr1 39183068 39183631 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03176 3 182 ZF-HD Transcription Factor Family AT1G14440 50.249 1.16e-62 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Tsu01g03176 ZF-HD_dimer 1.6e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03176 - - gmx:100793926 256.144