Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03173 ATGGTCGTTAGCGGAGGCAAATCCCTGAAACGTATGAAAAGAAGAGTCACTGCCGATCACCACGATTTCTTTTCATTCCCTTCACCATCCGTCGCCGTATCAGAAAACTTCTCCGGCGGACCATTCCGTTCAAACATCCGATCTTTTCTCACCAAGTACGCGCTTCTCCCACCGCCGTCGGCGCTGTTTCCACATCTGCTGACGTGGCAGATCCTCTTCCGTGTCGGTGAGATCACCGATGGTTCTGATTTAGGCCCCGCGGTGGTGTGCCTCGATGTTGTGGAAGAGGACGTGGCTAGATCTAGATCCGTTTACTGCGATCAGTGCCGAGTTTTCGgTTGGAGCGGCAACCCAGTGTGCGGGAAACGCTACCATTTTATAATCAAATCTGATGGGAGATCAATTGGTGGATACCACAAACCGTGTATGTGCTGTGGAGATATTTTGCATTTGTCAGAATCCAAATGTAAGTCATGTAACCATGTGACAACTAGTGATGATGTTGAAGACTGGGTGTACCACCAACTAGAGAACACAAGTCATCTTTTACACGGTGTTATCCATGCTAATGGTTATGGGCACCTTCTTCGGGTTAATGGCAGAGAAGGGGGATCTAGATTTCTTTCTGGTTGCCATATTATGGATTTCTGGGATCGCCTATGCAAGACACTTGGAGTCAGAAAAGTTAGTGTGATGGATGTTTCGAAGAAATATGGGCTAGAGTATCGCTTGCTCCATGCCATTATGAAGGGACGCCCATGGTACGGTGAGTGGGGATATAATTTTGGCTCCGGTAGCTATTGTCTCACACAGGAAGCATATAAGTCTGCTGTTGAAAGCCTATCCAATCTACCGTTGTCCGTCTTCCTCTCCCAGAAACAAAAGCCCCACTCACGTGTGCAGGATATGATCTTGTATTACCAGTCTTTGTCAGAGCACGAGCTTGTAAATCTGAGGGacctattttgttttttgatggGTTTGATGCTTGATGCTCGCAAGAATGCCTCTAAGTTTGATGACATAACCTGCAAGAAGCGTCGGTTTGATGCTTCTGGATTATCAAGTTCTTGGGAGAAAAGTGACATTGAACGTGTGGAGGAAGCCATGCTCAGAGTGCTGCGTGCAGTGTCTGGGTCTAATTGGGTGAGCCGTCGTGCTCTTAGGGGTGCTGTTTGCAAGGTGGCGTCTCCAGAGCTTCTTGATTATTGTCTTGCTGAACTGGGAGGAAAAGTGGTCTATGGTGGGGTTGTTACTAGCAGATGCAACCCTCAAACCGGAGTTTATGAATTCAGAATTGATGCTACAATTGATTCTTGCTTCGATGGATTTATGGCCAACAACAATCCTTCAGGCCGAAAGTGCCCATCTGAAGAGCATCTCATGCAATGCTTGAGATATTTATACGAGTCTTTGCTTCATCCTCGGATGATGCTAAACTATGTTGATGAAGAGACAAGAACTCTTGCAATGAGCTCGGCACAGAGGCTTCTTGACTGCAAACAATTAGTAAAAGATTATTGTTCTGAGATTTTGCCAGTGTCAGATTTCTATAAAATGCGCATCTCATGTCAGGTTGAACTAGCTGACCAATCTGAAGATTCTGCAGCTAGAACTCCACCAGAAATAATTGTGCTGCCCACAAATGCCACGGTATCTGACCTTAAGATTGAAGCAGGAAATGCTTTTCAAGACGTATATCTAATGTTTAGAAGATTTCAAGTTGACGAACTACTTGGCTACAGCGGTGTAGATGATTCCACCCAGGTCAAGCTCTTATTAGGATCAAATGAAGCGGTTTGTGTCCGAGGAAAATGTTCCGGGAAGACTGGGTTGAGCAAGTTTCGAATGGAACGGGGACTTGAGAGGTGGACTGTGGAGTGCAACTGTGGGGCTAAAGATGATGATGGAGAGAGAATGATGGCTTGTGATACATGTGGGGTGTGGCGGCACACTCGATGTTCTGGCATTCCTGATACTGCTCCTGTTCCAGCTCGTTTTGTTTGCCAGAAATGCCAAAGTTGTGACTCAAAGCCTAAATCTGGTGGGCACTGTAAAGATGAAGAGACTGGGACTAGTGTTAGTAATACTAGTAGCAGTTGCTTTGGAAATGGCTTGCCAGTGCCTTCTGATGTTTCGTTTAGGCATTGA 2151 0.4565 MVVSGGKSLKRMKRRVTADHHDFFSFPSPSVAVSENFSGGPFRSNIRSFLTKYALLPPPSALFPHLLTWQILFRVGEITDGSDLGPAVVCLDVVEEDVARSRSVYCDQCRVFGWSGNPVCGKRYHFIIKSDGRSIGGYHKPCMCCGDILHLSESKCKSCNHVTTSDDVEDWVYHQLENTSHLLHGVIHANGYGHLLRVNGREGGSRFLSGCHIMDFWDRLCKTLGVRKVSVMDVSKKYGLEYRLLHAIMKGRPWYGEWGYNFGSGSYCLTQEAYKSAVESLSNLPLSVFLSQKQKPHSRVQDMILYYQSLSEHELVNLRDLFCFLMGLMLDARKNASKFDDITCKKRRFDASGLSSSWEKSDIERVEEAMLRVLRAVSGSNWVSRRALRGAVCKVASPELLDYCLAELGGKVVYGGVVTSRCNPQTGVYEFRIDATIDSCFDGFMANNNPSGRKCPSEEHLMQCLRYLYESLLHPRMMLNYVDEETRTLAMSSAQRLLDCKQLVKDYCSEILPVSDFYKMRISCQVELADQSEDSAARTPPEIIVLPTNATVSDLKIEAGNAFQDVYLMFRRFQVDELLGYSGVDDSTQVKLLLGSNEAVCVRGKCSGKTGLSKFRMERGLERWTVECNCGAKDDDGERMMACDTCGVWRHTRCSGIPDTAPVPARFVCQKCQSCDSKPKSGGHCKDEETGTSVSNTSSSCFGNGLPVPSDVSFRH 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03173 716 ProSiteProfiles Zinc finger PHD-type profile. 625 675 IPR019787 -
Tsu01g03173 716 SMART PHD_3 627 673 IPR001965 -
Tsu01g03173 716 Pfam PHD-finger 628 675 IPR019787 -
Tsu01g03173 716 SUPERFAMILY FYVE/PHD zinc finger 617 673 IPR011011 -
Tsu01g03173 716 MobiDBLite consensus disorder prediction 675 700 - -
Tsu01g03173 716 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 1 680 - -
Tsu01g03173 716 CDD PHD_MMD1_like 627 672 - -
Tsu01g03173 716 PANTHER OS01G0877500 PROTEIN 1 680 - -
Tsu01g03173 716 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 613 678 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03173 Tsu-Chr1 39140709 39146113 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03173 86 672 PHD Transcription Factor Family AT5G22260 30.622 2.47e-87 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Tsu01g03173 PHD 2.4e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03173 - - mtr:MTR_1g076990 1286.94