Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03159 atggaagaaagagAGAATTTTGGTGCTGTGAATGTAGTAGTTGGTAATGAGGTTCCAGTAAGTTTCCAAGCTGCTCCAAGGATTGAAAACAACTTGGATTTTTCCATGGCAACGGTGCCATCACCGGCTACGGTGCCGGCGTTGAAAAAGAAGAGGGGGAGACCAAGGAAGTATGGACCAGATGGTAAGCCTACAGCAGGAGCTGTGACGGCGCTTTCGCCTATGCCGATTTCTTCGTCGATTCCGTTGACTGGAGAGTTCTCTGCTTGGAAAAGGGGTAGAGGGAAGCCTGTTGAATCTATCAAGAAATCATCTTTTaagtttgattttgaaagtccACCTGGACAAGgtgtaggtgtaaatgtaaatgtaaatgaGGGAATTGCATACTCAGCAGGTGCCAACTTCACGGCTTATGTGCTTACAGTGAATTCTGGCGAGGATGTTACTATGAAAATTATGTCCTCCCAACAAGGATCACGTGCTATATGCATTCTCTCTGCAACTGGCACAATTTCAAATGTTACACTTCGTCAATCAACTTCTTCAGGGGGTACTTTAACATACGAGGGACGGTTCGAGATTCTTTCCTTGTCTGGTTCCTTTATGCCAACTGACAATGGAATTACAAGAAGCAGATCTGGTGGTATGAGTGTCTCTTTGGCAGGTCCAGATGGTCGAGTATTAGGTGGTGGACTCGCTGGTTTGCTTATAGCTTCTGGTCCTGTGCAGGTCGTCGTAGGAAGTTTTCTTCCTACTCACAATCTGGAACACAAGAGCAAGAAGCCGAGGGTGGAGCATAATATATCAACTATTACACATAATAATCCTCCTCCACACCTTAATCATCATATGTCTACTGAAGTAAATTTTGGCGCAGTGAAACCTATTATGACACCAGGTGCATTTCAAGAAGAGAATATCGTTTCTTTCAACAACAATGCTCAAGACTCTAGGAACGACTCATCTGCTGATGACAGAGATCCTTTACCTGAAAAGGACTCTAACCATAGCCAATCAAATGCTTGA 1029 0.4198 MEERENFGAVNVVVGNEVPVSFQAAPRIENNLDFSMATVPSPATVPALKKKRGRPRKYGPDGKPTAGAVTALSPMPISSSIPLTGEFSAWKRGRGKPVESIKKSSFKFDFESPPGQGVGVNVNVNEGIAYSAGANFTAYVLTVNSGEDVTMKIMSSQQGSRAICILSATGTISNVTLRQSTSSGGTLTYEGRFEILSLSGSFMPTDNGITRSRSGGMSVSLAGPDGRVLGGGLAGLLIASGPVQVVVGSFLPTHNLEHKSKKPRVEHNISTITHNNPPPHLNHHMSTEVNFGAVKPIMTPGAFQEENIVSFNNNAQDSRNDSSADDRDPLPEKDSNHSQSNA 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03159 342 MobiDBLite consensus disorder prediction 312 342 - -
Tsu01g03159 342 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 10 332 IPR039605 GO:0003680
Tsu01g03159 342 MobiDBLite consensus disorder prediction 320 334 - -
Tsu01g03159 342 ProSiteProfiles PPC domain profile profile. 133 275 IPR005175 -
Tsu01g03159 342 CDD DUF296 139 250 IPR005175 -
Tsu01g03159 342 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 3 10 332 - -
Tsu01g03159 342 Gene3D - 137 270 - -
Tsu01g03159 342 SUPERFAMILY AF0104/ALDC/Ptd012-like 135 254 - -
Tsu01g03159 342 Pfam Plants and Prokaryotes Conserved (PCC) domain 138 250 IPR005175 -
Tsu01g03159 342 MobiDBLite consensus disorder prediction 46 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03159 Tsu-Chr1 38950410 38955082 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03159 34 275 AT-hook Motif Nuclear Localized (AHL) Family AT4G25320 59.200 2.04e-82 254
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03159 - - gmx:100776862 422.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g03159 01 38950410 38955082 Tsu01g03159 01 38950410 38955082 ECH
Tsu06g03303 06 43855017 43859550 Tsu01g03159 01 38950410 38955082 PCT