Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03138 aTGGTAGGATTGGAACTCATACCAATAGGTACTATTTTAACTGTGCTAACAAACCAAGTCTTGAGAACAGCTCATGCAGCAGCTGATGTTCTTGTTGGTAAAGAGAGTTTTAAGGCACTTTCGAAATATCTATTTGATATTGAGCCAGTTCTAAAGGAATTACAGCTTCAAGAATTGAATGATTCTCAACCTGCAAGAATTGCTCTTGAGTCCATTGAAGCAGATGTTAAAAGAGCAAATAATTTGGTTGAGAAGTACAAGAACCGTGGGCGTTTTTACTTGCTAGTTAAGTGTCGATCGATAGTTGAAGAAGTTGAACAAGTTACAAGGGATATTGGAAAGTCTCTTGCTGCACTGTCTATTGCAAATACCGAAGTGCTATCGAGAATTTCCGACCAGGTTGATAGACTACAAGATGAGATGCAAAGGGTTGAGTTCGAGGCTTCGCAATCTCAGCTTGAAATTGTTGATAAGTTGAACCAAGGACTAAGAGATCAGAACCATGATCAAGCTTTCGCGAATGACATGCTTGAGTTGATAGCAAGGGCTGTTGGAGTGCCAGTGGAACCGTCCGAGATAGGAAAAGAGTTGGCCAGCATTAGGAAGGAGAAAGAAGAAGCTGCCAATAACAAAGAAAGAGCAGAATTTTATTTCTTGGAGCAGATCATTAAATTACTCTCTAGAGCCGATGCAGCAAGGGATTATGAAGAAGTTAAGAATCAATACTTTGAAAGGGTTCAGGTGATAGAGAGATACGATTCAAGGGAAAAATATATCCCACCGCTTAAATCTTTCCTTTGCTGCATAACCGGAGGTGTTATGGTTGATCCTGTTAGCCTCTGCACAGGTACTACATGTGAGAGATCAGCTATTGAAGGTTGGTTTTACGATGGAAATAGTACAGATCCAGATACAAATGAGGTTCTTGAAGATATTAGTTTGAGGTCTAATATTCCACTAAGACAATCAATCGAAGAGTGGCGAGAACTTAATTATTGTCTTCAGATAAGGTCTATCCGGGAAAATTTGTTGTTAAATTCTGATCTACAAGAGTCCCTAAGCCAAATGCAGGCTCTAATAGCTGAGAATTCTATTAACAAGGACTGGATCTCTATCGGAGAGCTTACTGATATTGTTATATCGATCCTCGGGAACTCTAATAACAGAGAAGTGAAGATGAAGATTTTGATCACTTTGAAGGATGCTGTAGAAGGGCATGCAAGAAACAAGGAGAAATTGGCCGAATCTCAAGGATGGGATCATATTATTTCATGCTTAGAAAGTGACTCTAACATTTCAAAGGAAGCTGTTGATTTGCTATATGAGTTGCTTCAAGACAGGTCTGGTTGGAATCAATGTTTTTGCAAAAAACTTTCTGAGAACCATAATGCTGTTCTTTTCCTTGTAACCCTTGTAAAGGACCCTGATAACAATTCAGCCGAGGTTGCGCAGAAGATTTTGATGGAGCtttttgaaataaatgaaaacaGTATTATCACCGCTGCTAATTGTGGCTGGTATAAGCCACTAGCTGATCGCATGGTTCGAGGACCGGATTCAAGAATATCAATGGCAAAAGCCATAGTTAATTTGGAGTTGCATGATTTAAACTTGATACAACTTGGCAAGGAAGGAGTTATAGCTCCTTTGATAGAAATGCTGTCTGGAAGTAGACGGGGTATTAGTAATGCATCAACCATTATCGAATCGAAAGACCTGTCATTATCAGCTCTTGTTAAATTAGCTGGATCTCATGCCAACAAGGGAATTATTGCTTCCTCTGGCGGTGTTCCTCTAATTCTAGATTTAATGTTCTCTCCTCGGACAAGGTCATTCATTACAATTAAATGCTCTGAAATCCTCGAGAAACTTTCTTCTTCTGATGATGGAATTGATTTCTTTGTTGATGGAGAAGGGAAACAGCTCGAGTTAGATTCAATCATCACAAACTTGCTACTTTTGCAACAGAATTCCAACTCAGGTCACAACCTTCGTAAGCCCACGCTACGCGCTCTTCTTGGCATCTGCAAGTTCGAGACTAGTTTGGTGAAAAAAGCAATTCTTGCAGCCAATGGTGTATCTCTAATTCTTCCACTTCTCGATGACTCCGACTCAGAAATCCGAGAGACTGCGATAAATCTgctctttcttttctctcagcATGAACCAGAAGGAGTAGTTGAATACCTCTTCAAGCCTAGAAGGCTAGAGGCTTTGATTGGATTCCTTGAAAACGACGACAATGATAATGTACAAATGGCTGCTGCTGGTTTACTAGCTAACCTACCGAAATCAGAACGAGAACTAACTAATAAGTTGATTGAAATGGGAGGACTTGATGCAATCTTAAGCATTTTAAAAACCGGTAAAATGGAAGCAAAAGAAAACGCTCTCAGTGCACTCTTCAGATTCACAGATCCAACAAATATCGAGTCACAGCGCGATTTGGTTAAACGCGGAATATATCCTTTACTTGTAGACTTTCTCAATACAGGCTCAGTCACTGCAAAGGCAATAGCAGCAGCTTTCATTGGAGATCTTTCTATGAGCACTCCAAAGCTAACAGTTGCTTCCAAACCAAACGGTTGCTGGTTTTTCAGATCATCACGCGTTCCTTTATGTGCAGCGCACGATAGTGTATGCAGTGTGACCACAACATTTTGTCTGTTGGAAGCAAATGCTTTACCTGGCTTGATAAAACTGTTACATGGAGAGGTTCATGCAACTGCTTATGAAGCAATACAAACACTTTCTACAATGGTTTTGGAAGAGTTTCCGCATAGGGGTGCTCGTTTGTTGCATGAGTCGAATGCAATGAGACCTTTATTGGAGATTTTGAATTGGGGAAGTGAGTCCCTTAAGGCAGAAGCTTTAGGACTTATGGAGAAGGTTTTTGTGTCAAAGGAAATGGTGGAATACTATGGAATGACGGCTAGATCGCGTCTAGTTCATTTGACTGGAACAAATATATATGGAGATGGTCATCTTAGAAGGAAAGCTGCTAAGGTTTTATCACTGCTTGAACGTTATTCTAAGTCTTCATCATCTGCAATCTCTGGAGTTTTGGAGTGA 3072 0.3975 MVGLELIPIGTILTVLTNQVLRTAHAAADVLVGKESFKALSKYLFDIEPVLKELQLQELNDSQPARIALESIEADVKRANNLVEKYKNRGRFYLLVKCRSIVEEVEQVTRDIGKSLAALSIANTEVLSRISDQVDRLQDEMQRVEFEASQSQLEIVDKLNQGLRDQNHDQAFANDMLELIARAVGVPVEPSEIGKELASIRKEKEEAANNKERAEFYFLEQIIKLLSRADAARDYEEVKNQYFERVQVIERYDSREKYIPPLKSFLCCITGGVMVDPVSLCTGTTCERSAIEGWFYDGNSTDPDTNEVLEDISLRSNIPLRQSIEEWRELNYCLQIRSIRENLLLNSDLQESLSQMQALIAENSINKDWISIGELTDIVISILGNSNNREVKMKILITLKDAVEGHARNKEKLAESQGWDHIISCLESDSNISKEAVDLLYELLQDRSGWNQCFCKKLSENHNAVLFLVTLVKDPDNNSAEVAQKILMELFEINENSIITAANCGWYKPLADRMVRGPDSRISMAKAIVNLELHDLNLIQLGKEGVIAPLIEMLSGSRRGISNASTIIESKDLSLSALVKLAGSHANKGIIASSGGVPLILDLMFSPRTRSFITIKCSEILEKLSSSDDGIDFFVDGEGKQLELDSIITNLLLLQQNSNSGHNLRKPTLRALLGICKFETSLVKKAILAANGVSLILPLLDDSDSEIRETAINLLFLFSQHEPEGVVEYLFKPRRLEALIGFLENDDNDNVQMAAAGLLANLPKSERELTNKLIEMGGLDAILSILKTGKMEAKENALSALFRFTDPTNIESQRDLVKRGIYPLLVDFLNTGSVTAKAIAAAFIGDLSMSTPKLTVASKPNGCWFFRSSRVPLCAAHDSVCSVTTTFCLLEANALPGLIKLLHGEVHATAYEAIQTLSTMVLEEFPHRGARLLHESNAMRPLLEILNWGSESLKAEALGLMEKVFVSKEMVEYYGMTARSRLVHLTGTNIYGDGHLRRKAAKVLSLLERYSKSSSSAISGVLE 1023
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03138 1023 Coils Coil 69 89 - -
Tsu01g03138 1023 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 243 338 IPR013083 -
Tsu01g03138 1023 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 6 1020 - -
Tsu01g03138 1023 Pfam U-box domain 264 329 IPR003613 GO:0004842|GO:0016567
Tsu01g03138 1023 SUPERFAMILY RING/U-box 247 330 - -
Tsu01g03138 1023 Gene3D - 9 123 IPR036537 GO:0007166
Tsu01g03138 1023 Gene3D - 640 1020 IPR011989 -
Tsu01g03138 1023 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 6 1020 - -
Tsu01g03138 1023 Gene3D - 340 639 IPR011989 -
Tsu01g03138 1023 Coils Coil 127 154 - -
Tsu01g03138 1023 SMART Ubox_2 264 327 IPR003613 GO:0004842|GO:0016567
Tsu01g03138 1023 SUPERFAMILY ARM repeat 362 730 IPR016024 -
Tsu01g03138 1023 SMART arm_5 809 849 IPR000225 GO:0005515
Tsu01g03138 1023 SMART arm_5 766 806 IPR000225 GO:0005515
Tsu01g03138 1023 SMART arm_5 680 720 IPR000225 GO:0005515
Tsu01g03138 1023 SMART arm_5 722 764 IPR000225 GO:0005515
Tsu01g03138 1023 SMART arm_5 882 922 IPR000225 GO:0005515
Tsu01g03138 1023 SMART arm_5 406 445 IPR000225 GO:0005515
Tsu01g03138 1023 SMART arm_5 584 626 IPR000225 GO:0005515
Tsu01g03138 1023 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 734 762 IPR000225 GO:0005515
Tsu01g03138 1023 ProSiteProfiles U-box domain profile. 260 334 IPR003613 GO:0004842|GO:0016567
Tsu01g03138 1023 SUPERFAMILY ARM repeat 644 1011 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03138 Tsu-Chr1 38666083 38670756 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03138 263 978 U-box Gene Family AT1G20780 26.275 2.10e-38 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03138 - - gmx:100783638 1613.59