Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03129 atggaaaacagtGTTGCATATGACAAAGATCTTAACATGAAGGATACTGAGCTAAGATTAGGACTACCAGGAACAGagaaaaatgagaaagaagaaTCAACACTTTCTGTTAAAGTTTCTAACAAAAGACCAATGGTTGAATCTTCAAAGGACAATGGTTCAAAAACATCTGATGAAGAAGCACCTCCTTCTAAGGCTAAGATAGTTGGGTGGCCACCAATAAGATCTTATAGGAAGAACAGTTTACAAGAAGCTGAGGCTTCTGGGATTTATGTGAAAGTGAGTTTGGATGGTGCTCCTTATCTTAGAAAGATTGATTTAAGGATCTATGGAGGCTATGCACAACTTCTCAAAGCTTTAGAAAACATGTTTAAGTTAACCATAGGTGATTATTCTGAAAAAGAAGGTTATAAGGGATCTGATTATGAACCTACTTATGAAGACAAGGATGGTGATTGGATGCTAGTTGGAGATGTTCCATGGGAGTAA 489 0.3497 MENSVAYDKDLNMKDTELRLGLPGTEKNEKEESTLSVKVSNKRPMVESSKDNGSKTSDEEAPPSKAKIVGWPPIRSYRKNSLQEAEASGIYVKVSLDGAPYLRKIDLRIYGGYAQLLKALENMFKLTIGDYSEKEGYKGSDYEPTYEDKDGDWMLVGDVPWE 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03129 162 MobiDBLite consensus disorder prediction 1 67 - -
Tsu01g03129 162 Pfam AUX/IAA family 47 162 IPR033389 -
Tsu01g03129 162 MobiDBLite consensus disorder prediction 7 37 - -
Tsu01g03129 162 PANTHER AUXIN-INDUCED PROTEIN 10 162 - -
Tsu01g03129 162 Gene3D - 83 162 - -
Tsu01g03129 162 SUPERFAMILY CAD & PB1 domains 80 162 - -
Tsu01g03129 162 MobiDBLite consensus disorder prediction 44 62 - -
Tsu01g03129 162 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 10 162 IPR003311 GO:0005634|GO:0006355
Tsu01g03129 162 ProSiteProfiles PB1 domain profile. 89 162 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03129 Tsu-Chr1 38540026 38541644 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03129 92 161 B3 DNA Binding Superfamily AT4G23980 34.286 4.80e-07 46.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Tsu01g03129 AUX_IAA 1.2e-35 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03129 K14484 - gmx:100527777 246.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g03129 01 38540026 38541644 Tsu01g03129 01 38540026 38541644 ECH