Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03128 ATGGCTACTATGATTGGAAAAGAtaatgatttgaatttgaagacTGAGCTTTGTCTTGGTTTACCTGGTGGTGGTGGCGGCGGTGGCAGTGGTGGCTCTGAGCAGGTGGAAACTCCAAGGGCTTCTGCAAAGAGAGGTTTCTCTGAGACTATTGATCTGAAGCTTAATCTTCAAACCAAAGAAGATCTGAATGGGAACATTAAGAATGTTTCAAAGGAAAAGAATCTCCTTAAGGACCCTTCTAAGCCACCAGCTAAGGCTCAAGTAGTTGGTTGGCCACCAGTGAGATCATACAGGAAGAACATGATGGCACAGAAGGCTAACAATATTACTGAAGATGGCAATACTGAGAAGACAACAAGCAGCACTATTACTTCTGGTGCATTTGTTAAGGTTTCCATGGATGGAGCACCTTACCTTCGTAAGGTTGACTTAACAATGTACAAAACCTACAAAGATTTATCTGATGCCTTAGCCAAAATGTTCAGCTCCTTCACCACTGGTAACTATGGGGCCCAAGGAATGATAGACTTCATGAATGAGAGTAAGTTGATGGATCTTCTTAACAGCTCTGAGTATGTGCCAACCTATGAAGATAAGGATGGCGACTGGATGCTCGTGGGAGATGTCCCTTGGGAgatGTTTGTTGGATCATGCAAGCGTCTCCGCATAATGAAAGGATCAGAAGCAATTGGGCTTGCACCAAGAGCAATGGAAAAATGCAAAAACCGAAGCTGA 738 0.4268 MATMIGKDNDLNLKTELCLGLPGGGGGGGSGGSEQVETPRASAKRGFSETIDLKLNLQTKEDLNGNIKNVSKEKNLLKDPSKPPAKAQVVGWPPVRSYRKNMMAQKANNITEDGNTEKTTSSTITSGAFVKVSMDGAPYLRKVDLTMYKTYKDLSDALAKMFSSFTTGNYGAQGMIDFMNESKLMDLLNSSEYVPTYEDKDGDWMLVGDVPWEMFVGSCKRLRIMKGSEAIGLAPRAMEKCKNRS 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03128 245 PANTHER AUXIN-RESPONSIVE PROTEIN IAA7 7 238 - -
Tsu01g03128 245 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 7 238 IPR003311 GO:0005634|GO:0006355
Tsu01g03128 245 Pfam AUX/IAA family 40 236 IPR033389 -
Tsu01g03128 245 MobiDBLite consensus disorder prediction 22 45 - -
Tsu01g03128 245 SUPERFAMILY CAD & PB1 domains 117 226 - -
Tsu01g03128 245 ProSiteProfiles PB1 domain profile. 127 227 IPR000270 GO:0005515
Tsu01g03128 245 Gene3D - 122 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03128 Tsu-Chr1 38485690 38488971 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03128 125 230 B3 DNA Binding Superfamily AT3G61830 33.019 9.01e-09 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Tsu01g03128 AUX_IAA 9.8e-84 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03128 K14484 - gmx:547949 380.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g03128 01 38485690 38488971 Tsu01g03128 01 38485690 38488971 ECH