Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03110 ATGGTAAGAGCTCCTTGTTGTGAAAAAATGGGATTGAAGAGAGGTCCTTGGTCTCTTGAGGAAGATCAAATCCTTACATCTTACATCCAAAAACATGGTCATGGCAACTGGCGTGCTCTCCCAAAGCTAGCAGGCTTGTTAAGGTGTGGAAAAAGCTGCAGACTTAGGTGGATTAACTATTTGAGACCTGATATCAAGAGAGGAAATTTCACAAATGAAGAAGAGGAAAATATCATTAAGCTCCATGAAATGCTTGGGAATAGgtGGTCAGCAATAGCAGCAAAATTACCGGGAAGAACAgacaatgaaataaaaaatgtgtggCACACACATTTGAAGAAGAAACTATTGAAAACAAATGAAACAAACTTGGAAGCTAAGAAAAGGGtgatcacaaaaacaaaaatcaaacgTTCTGATTCAAATTCAAGTACTATAACACAATCAGAATCAGCTTCTGCATGCACTACTAGTTCTAGTGATTTTTCATCTGTCACCGTTGGTGAAAAAATAGATGTAAAAAGTGAAGACATTGAGTCCATGGAAGAAGAAACAATGCCTGAAATTGATGAGAGCTTTTGGACAGAAGCAGCATTGGATGAAACTTCAACTGATATGAAATCAAGTTCTTTGAATATCTCAAATGAGATAATGCCACTTCAATGTCCTTTAAGTAATTCTGATGAAATTTTCCCACAGAATCATGATGATTATAATTCTAACTTAGATGATGGCATGGATTTTTGGTATGATATATTCATTAGGACTGGTGATCAAATAGAATTGCCAGAGTTCTGA 798 0.3434 MVRAPCCEKMGLKRGPWSLEEDQILTSYIQKHGHGNWRALPKLAGLLRCGKSCRLRWINYLRPDIKRGNFTNEEEENIIKLHEMLGNRWSAIAAKLPGRTDNEIKNVWHTHLKKKLLKTNETNLEAKKRVITKTKIKRSDSNSSTITQSESASACTTSSSDFSSVTVGEKIDVKSEDIESMEEETMPEIDESFWTEAALDETSTDMKSSSLNISNEIMPLQCPLSNSDEIFPQNHDDYNSNLDDGMDFWYDIFIRTGDQIELPEF 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03110 265 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 256 - -
Tsu01g03110 265 PANTHER MYB-RELATED TRANSCRIPTION FACTOR LBM1 1 256 - -
Tsu01g03110 265 CDD SANT 69 112 IPR001005 -
Tsu01g03110 265 CDD SANT 16 61 IPR001005 -
Tsu01g03110 265 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Tsu01g03110 265 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Tsu01g03110 265 MobiDBLite consensus disorder prediction 136 160 - -
Tsu01g03110 265 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
Tsu01g03110 265 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Tsu01g03110 265 MobiDBLite consensus disorder prediction 137 160 - -
Tsu01g03110 265 SMART sant 13 63 IPR001005 -
Tsu01g03110 265 SMART sant 66 114 IPR001005 -
Tsu01g03110 265 Gene3D - 14 66 - -
Tsu01g03110 265 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Tsu01g03110 265 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Tsu01g03110 265 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Tsu01g03110 265 Gene3D - 69 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03110 Tsu-Chr1 38301192 38304408 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03110 1 265 MYB Transcription Factor Family AT2G31180 49.446 2.00e-77 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu01g03110 Myb_DNA-binding 3.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03110 K09422 - gmx:100807569 370.163