Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03103 ATGGGACAAGGGCAATCGAAAAGCGAATTGCTCTACCAGCAAGTCAGTTATGGGAATTCCGAAGGAATCAAAACCCTTCACAGAGAAGGTGCAGGTCTTGAGTATATGGATAAAGAAGGAAAAACACCCTTGATTGTTGCTTGTATGAATCCTGAGCTTTACAATGTTGCTAAAACATTGATTGAACTTGGAGCAAATATCAATGCTTATCGTCCCGGTCGTCATGCTGGGACTCCATTGCATCATGCAGCTAAAAAGGGCCTTGAAAGTATTGTTAAGTTACTTCTTTTGCATGGAGCCAATCCTTTGATCTTGAATGATGATTGTCAAACTGCTCTTGAGGTTGCCAGGGCTAAAGGAAACAGCAATGTTGTTCGTGCAATTGAGAGTCATATATGCTTGTTCTCCGGTTGGTTGCGGGAGTTTCATGGACCTGGGTTTCTAGAAGTAGTTGCTCCTAATTTGGTATCGAGAAAAGTTTGGGCGGTAGTTTTACCAGTAGGCTCCCGTGCTCTCACCAGACCTTATAAGTTGGAGCTTGCCGTATATTCTACTTTGCAGCAGGATGCACGGCCACGTACACTTGTTGCTCTGTGGAAGGCCAATTTAGAAGAACCAAAGCTTCGCCAATCTGAACCGTCAGTGGCAATTAGTGATAAGACTACCAAAACACGCCTTAAATTTGGGCCTGCAAGTGAGAATGACAGGCAACAACTTACATGGTTTTCTAATGCTTGCAAAGGAATTCCACAGGTAAATCCAGCATTTTTGAACAATAATGCGCCTACAATTCCACCAACAGCACCCCCATCTGCTGAAGACCCAGAATTGGCTATGGCTATCCATGCATCTATTCAGCATGCCATTCAGGAGAGGCTAAGTTTTCCTGATGTCCAGCCAAATTCTCAAGCAAGCTCTTCCATCAGTGGAGTAAATGAAGTGCAAGGTTTTCTTGGTacaccaaatccaaatccaaatgcTAATGATTTTGTACATGAACCTGTTCCACATGTCCAGAGCGATGACAATGTTTCTGCTGGCCATACTATCAGTGGTCTGGATTTAAATCCATCAGCTCCTCCATTAGCTGATGATGTTCCATTAGATGGCCCGATTCATTATCCTTCAATTGATTCGAGCCCTGTTAATGTATCATCTTCAGTAGTTGAGAAGCTATCAAACAACGATGGAAAAACTGCTGATGGAAGTGGCTCAACGTGCGTGATATGTTTGGATGCTCCAGCAGAAGGGGCATGCATACCCTGTGGCCATGTTGCTGGATGCATGTCTTGCTTGAACGAGGTTAAAACAAAGAAATGGGGTTGCCCTGTTTGTCGAGCTAAAATAGACCAGATCATAAAGCTATATCACGTTTGA 1377 0.4292 MGQGQSKSELLYQQVSYGNSEGIKTLHREGAGLEYMDKEGKTPLIVACMNPELYNVAKTLIELGANINAYRPGRHAGTPLHHAAKKGLESIVKLLLLHGANPLILNDDCQTALEVARAKGNSNVVRAIESHICLFSGWLREFHGPGFLEVVAPNLVSRKVWAVVLPVGSRALTRPYKLELAVYSTLQQDARPRTLVALWKANLEEPKLRQSEPSVAISDKTTKTRLKFGPASENDRQQLTWFSNACKGIPQVNPAFLNNNAPTIPPTAPPSAEDPELAMAIHASIQHAIQERLSFPDVQPNSQASSSISGVNEVQGFLGTPNPNPNANDFVHEPVPHVQSDDNVSAGHTISGLDLNPSAPPLADDVPLDGPIHYPSIDSSPVNVSSSVVEKLSNNDGKTADGSGSTCVICLDAPAEGACIPCGHVAGCMSCLNEVKTKKWGCPVCRAKIDQIIKLYHV 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03103 458 ProSiteProfiles Zinc finger RING-type profile. 407 446 IPR001841 -
Tsu01g03103 458 SMART ring_2 407 445 IPR001841 -
Tsu01g03103 458 Pfam Zinc finger, C3HC4 type (RING finger) 405 452 - -
Tsu01g03103 458 ProSiteProfiles Ankyrin repeat profile. 75 107 IPR002110 GO:0005515
Tsu01g03103 458 ProSiteProfiles Ankyrin repeat region circular profile. 39 69 - -
Tsu01g03103 458 PANTHER UBIQUITIN-PROTEIN LIGASE XBAT35, PUTATIVE-RELATED 1 458 - -
Tsu01g03103 458 PANTHER ROLLING PEBBLES, ISOFORM B 1 458 - -
Tsu01g03103 458 SMART ANK_2a 75 104 IPR002110 GO:0005515
Tsu01g03103 458 SMART ANK_2a 39 69 IPR002110 GO:0005515
Tsu01g03103 458 SUPERFAMILY RING/U-box 406 452 - -
Tsu01g03103 458 SUPERFAMILY Ankyrin repeat 9 133 IPR036770 -
Tsu01g03103 458 Pfam Ankyrin repeats (many copies) 60 116 IPR002110 GO:0005515
Tsu01g03103 458 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 385 457 IPR013083 -
Tsu01g03103 458 ProSiteProfiles Ankyrin repeat region circular profile. 75 101 - -
Tsu01g03103 458 Gene3D - 3 145 IPR036770 -
Tsu01g03103 458 ProSiteProfiles Ankyrin repeat profile. 39 72 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03103 Tsu-Chr1 38187629 38193778 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03103 397 455 C3H Transcription Factor Family AT3G06140 33.898 9.84e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03103 - - lang:109354249 686.797