Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03096 ATGCTGGATTCTTTTTCTTGGACAGTCTCAATTTCTTTAGCCTTGCTCAGTTTAACACTTAACACCAAAGTCACAAGGAATTTACCAGCGTGTTTCGATCATCTCTCCGTGATCGATATCTACAAGTTTGAGCCTTGGGATCTTCCAAGTTTATCGAAGTTGAAAACTAGGGATTTGGAATGGTATTTTTTCACTAGTTTGGACAAGAAGTATGGTAGTAGTAACAGGACGAATCGTGCTACTGATAGAGGTTACTGGAAGACTACTGGCAAGGATCGTGTTATCAAGAATGGGGAGGTTACCGTTGGAATGAAGAAGACTCTTGTTTATCACTTGGGTAGGGCTCCACATGGTGACAGGTCCAATTGGGTTATGCATGAATATAGGATGATTGATCCCAAAGATGATGCATATGTTCTGTGTAGGGTATTCGAGAAGAGTGGTTCCGGGCCGAAGAACGGGGAGAAATATGGTGCACCCTTTGTTGAAGCCGAATGGGAGAATGTTGTTAAAGTTGAAGGACTGTCGTCTGTTAATAACAACGCTCCTGATGTCGATGATGAACAGGTGAATTCCTTGGTGGCTGTTGATAATGTTATGCATATGCATCATGGTGTCACATTTGGAAGCACTGATCTTCCATCATCAAACTACTGTTATGGGGAGCAATTGGAACCTGATAATCAGGTTGAGGATATCATCAATTCAATGCAAGATGGTGAGGATCTTCCGGATCTATATTTTGATCTCGCAGATTTCGGTGAAGATTACCTTGAATCCAACGATATTGACGACTCTGAGATAGATCCTTCCGTTGCAACAGCTATGGTAGATGAGTATCTTGCATACCCTGATGAAGATATATGTGTCGATTCTACTGTGAATGGAGGGAGTGAAAGAAGCCCTATTGCCAACTATGGACAACCTTTGATTGATCAGAATCTGGAGGGTGCTAGTTCCTTGGCAAACAAACATGTTTTTGAAGCACAGCCGTCTAGTAATCAAGACAATCTAGAGGCATCAAATTCAGTGCAAGATGGTGAGGATCTTCCAGTTCTATATTTTGATCTCACAGATTTGGGTGAAGATTACCTTGAAACCAATGATATTCCCTCTGAGATAGATCCTTCCGTTGCAGCAGCTATGGTAGATGAGTATCTTGCATACCCTGATGAAGAAGATATATGCCTCGATTCTACTGTGAATGCAGGGAGTGAAAGAAGCCCTATTGCCAACTATGGACAACCTTTGATTGATCAGAATCCGGAGGGTGCTAGTTCCTTGGCAAACAAACATGTTTTTGAAGCACAGTCGTCTAGTAATCAAGTTTTGCCAAAGGACAATCTAGAGGCATCAAATTGGGTCTCAGGAAATTATTTTGTGAAGCAAGCCAATAAATTTTTAGCCCACATACCATCTCCACCTGCTAACAAGTGTTTGCTCTTGGGATGCATGATGGAGCAGCATAGTCTTCCAGTTCAGCTCATATAG 1491 0.4192 MLDSFSWTVSISLALLSLTLNTKVTRNLPACFDHLSVIDIYKFEPWDLPSLSKLKTRDLEWYFFTSLDKKYGSSNRTNRATDRGYWKTTGKDRVIKNGEVTVGMKKTLVYHLGRAPHGDRSNWVMHEYRMIDPKDDAYVLCRVFEKSGSGPKNGEKYGAPFVEAEWENVVKVEGLSSVNNNAPDVDDEQVNSLVAVDNVMHMHHGVTFGSTDLPSSNYCYGEQLEPDNQVEDIINSMQDGEDLPDLYFDLADFGEDYLESNDIDDSEIDPSVATAMVDEYLAYPDEDICVDSTVNGGSERSPIANYGQPLIDQNLEGASSLANKHVFEAQPSSNQDNLEASNSVQDGEDLPVLYFDLTDLGEDYLETNDIPSEIDPSVAAAMVDEYLAYPDEEDICLDSTVNAGSERSPIANYGQPLIDQNPEGASSLANKHVFEAQSSSNQVLPKDNLEASNWVSGNYFVKQANKFLAHIPSPPANKCLLLGCMMEQHSLPVQLI 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03096 496 Gene3D NAC domain 14 149 IPR036093 GO:0003677|GO:0006355
Tsu01g03096 496 PANTHER NAC DOMAIN CONTAINING PROTEIN 53-RELATED 27 178 - -
Tsu01g03096 496 Pfam No apical meristem (NAM) protein 15 130 IPR003441 GO:0003677|GO:0006355
Tsu01g03096 496 ProSiteProfiles NAC domain profile. 2 146 IPR003441 GO:0003677|GO:0006355
Tsu01g03096 496 PANTHER NAC DOMAIN-CONTAINING PROTEIN 82-RELATED 27 178 - -
Tsu01g03096 496 SUPERFAMILY NAC domain 23 146 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03096 Tsu-Chr1 38097975 38100907 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03096 15 167 NAC Transcription Factor Family AT5G04410 65.000 1.63e-67 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Tsu01g03096 NAM 9.2e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03096 - - mtr:MTR_1g090723 381.333