Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03061 ATGAGAGCTAAGAGTTTGATAATTAAGAGGAAGTTTAGTATTAGAAGgaaattgaagaagatgatAAAGTGTGTGTGTTCAAGGGAAAAGTTAAGTGTAGATGAAATGAATTATTCATCAGAATCTCTTGCAACTAGGGACTATTCAGCAACAGCAAGTGGTTATTCATCTCATCCTGGTGAAAATGGAACAAAAGTTGATAATAGTAACATTGAAGAAGCAGAATCGTCTCTTCGTGAAAGTGGTTATTTGAACTATGAGGAAGCTAGAGCCTTGTTAGGAAGACTTGAGTATCAGAAAGGGCACATTGAAGCTGCACTTCATGTATTTGAAGGAATAGACATTGCTGCTGTCATTCCCAAGATGAAAATGTCTATATCTAAAAGATGTGAATCCAATAATAAAAGCCGTCCGCAAAGTGATTCAGTGCCTTCTATGTCAATACATGCTGTTAGTTTACTTCTTGAAGCTGTTTACCTCAAAGCAAAATCATTGCAGACTCTTGGAAGGTTTCAAGAAGCTGCTCAATCATGCAAAACTATTTTAGACACTATTGAATCTGCACTACCAGAAGGCTGGCCTGAAAACTTTGTTTCGGATTGTAAATTACAAGAGACGGTAACTACTGCTGTTGAACTGCTTCCAGAGTTATGGAACCTTGCAGGCTCACCTCAAGATGTTATCTCATCATTTAGAAAAGCATTACTTTATCATTGGAATCTTGACATTGAAGCAACTGCAAGAATACAAAAGGAATTCGCATTGTTTCTTTTGTACAGCGGTTACGAAGCGGACTCTCCTTCGCTTCGGTCACAATTGGATGGTTCGTTTGTGCCGAGAAACAACATAGAAGAAGCTATTCTTCTACTTCTGATTCTGCTGAGACAATCAAAAGATCCTTCAATAATTCATCAcctttcttttgctttaagCGTTTGTGGTGAATTCGTGACACTAGCTCAACAGGTTGAGGAATTACTTCCAGAAACAAtggaaagaagagaaagatatTATACTCTAGCACTTTGTTACTGCGGCGAAGGAGAGCATATAGTTGCTTTGGATCTTTTGAGGAACTTTTTGAATAATAGAGAGAACTCGGTATACTCAGATTGCACAGAGGAATTACTTTTAGCTTCGAAAATTTGTGCAGACAATAAGGTTTGTGTCGAAGACGGAATCAAATTTTCAAGCAAGGCTATTTCTCAGATGTATGGCAAATGCAATCAAATTGAAGCTATTGCAAATTGTTTACTAGGTGTTCTACTGTCAGCAAAATCAAAATCAGCTTCTTCTGAATCAGAGAAAGTTTTGATGCAATCTCAAGCATTCAGTGCTCTAAAAGCTTCTGAGAGAATGATGATGGAAAATGATCCTTACATTGTTCTTAATCTTTGTCTGGAATATGCTGAACATAGGAATTTGAGAGTTGCTTATAATCATGCAAAGAATTTGGTTAAGCTGGAAGGTGGATCTAGTATTAGCGGATATATACTACTAGCGCGGATTCTATCGGCTCAAAAAAAGTTAGTTGATGCCGAGATTGTTATTGATGCTGCTTTAGATCAAAGTGGGAGATGGGATCAAGGAGAATTGTTGAGAACTAAAGCTAAGATTCAAATTGCACAGGGAAGATTGAAAAATGCTATTGAGACATACACTTATTTTCTTGCTGTTCTTCAAGTCCAAAATAAAAGTCTAGGCACTGCAAATAAGGTTATGAAGTATAAAAGAAATCGCGACAGAAGACTTGAAATGGAAGTGTGGCATGATCTGGCCAATGTGTACACAGCTTTATCACAGTGGCGTGATGCTGAAGTTTGTCTTGCCAAGTCTCAAGCTATTGATCCATATTCTGCTTCTAGATGGCACTCCACAGGTTTACTTTATGAAGCAAGAGGTCATCATCAAGAAGCATTGAAATCATTTAGAAAAGCATTAGATATTGAGCCAAACCATGTGGCAAGTTTGATATCAACAGCTTGTGTTCTAAGAAAACTTGGTTGtcaatcatcatcttcaattgTTAGAAGCCTTCTCACTGAAGCATTAAGGCTTGACAGAACAAACTCATCTGCATGGTACAATCTTGGACTTCTCTACAAAGCTGATTTAGGGACATCAACATTGGAAGCTGCTGAATGCTTTGAAGCAGCTGTTTTTCTTGAAGAATCTTCTCCCATTGAACCCTTTAGATAA 2199 0.3652 MRAKSLIIKRKFSIRRKLKKMIKCVCSREKLSVDEMNYSSESLATRDYSATASGYSSHPGENGTKVDNSNIEEAESSLRESGYLNYEEARALLGRLEYQKGHIEAALHVFEGIDIAAVIPKMKMSISKRCESNNKSRPQSDSVPSMSIHAVSLLLEAVYLKAKSLQTLGRFQEAAQSCKTILDTIESALPEGWPENFVSDCKLQETVTTAVELLPELWNLAGSPQDVISSFRKALLYHWNLDIEATARIQKEFALFLLYSGYEADSPSLRSQLDGSFVPRNNIEEAILLLLILLRQSKDPSIIHHLSFALSVCGEFVTLAQQVEELLPETMERRERYYTLALCYCGEGEHIVALDLLRNFLNNRENSVYSDCTEELLLASKICADNKVCVEDGIKFSSKAISQMYGKCNQIEAIANCLLGVLLSAKSKSASSESEKVLMQSQAFSALKASERMMMENDPYIVLNLCLEYAEHRNLRVAYNHAKNLVKLEGGSSISGYILLARILSAQKKLVDAEIVIDAALDQSGRWDQGELLRTKAKIQIAQGRLKNAIETYTYFLAVLQVQNKSLGTANKVMKYKRNRDRRLEMEVWHDLANVYTALSQWRDAEVCLAKSQAIDPYSASRWHSTGLLYEARGHHQEALKSFRKALDIEPNHVASLISTACVLRKLGCQSSSSIVRSLLTEALRLDRTNSSAWYNLGLLYKADLGTSTLEAAECFEAAVFLEESSPIEPFR 732
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03061 732 PANTHER OS10G0471400 PROTEIN 13 732 - -
Tsu01g03061 732 Gene3D Tetratricopeptide repeat domain 65 573 IPR011990 GO:0005515
Tsu01g03061 732 Gene3D Tetratricopeptide repeat domain 574 727 IPR011990 GO:0005515
Tsu01g03061 732 SUPERFAMILY TPR-like 531 702 IPR011990 GO:0005515
Tsu01g03061 732 SUPERFAMILY TPR-like 155 551 IPR011990 GO:0005515
Tsu01g03061 732 PANTHER PROTEIN NPG1 13 732 IPR043376 -
Tsu01g03061 732 ProSiteProfiles TPR repeat profile. 620 653 IPR019734 GO:0005515
Tsu01g03061 732 SMART tpr_5 155 188 IPR019734 GO:0005515
Tsu01g03061 732 SMART tpr_5 530 563 IPR019734 GO:0005515
Tsu01g03061 732 SMART tpr_5 586 619 IPR019734 GO:0005515
Tsu01g03061 732 SMART tpr_5 691 726 IPR019734 GO:0005515
Tsu01g03061 732 SMART tpr_5 494 527 IPR019734 GO:0005515
Tsu01g03061 732 SMART tpr_5 620 653 IPR019734 GO:0005515
Tsu01g03061 732 Pfam Tetratricopeptide repeat 623 653 IPR013105 -
Tsu01g03061 732 ProSiteProfiles TPR repeat region circular profile. 620 653 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03061 Tsu-Chr1 37560724 37565471 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03061 14 732 Calmodulin-binding Proteins AT4G28600 51.696 0.0 701