Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03059 ATGGGGAAAGAAAAGGTTCACATTAACATTGTTGTCATTGGCCATGTCGACTCTGGCAAGTCAACTACCACCGGTCACTTGATCTACAAGCTTGGTGGTATTGACAAGCGTGTGATTGAGAGGTTTGAGAAAGAAGCTGCTGAGATGAACAAGCGTTCATTCAAGTATGCCTGGGTTCTTGACAAGCTCAAGGCTGAGCGTGAAAGAGGTATCACAATTGACATTGCATTGTGGAAGTTTGAGACAACTAAGTACTATTGCACTGTCATTGATGCCCCCGGACACAGggatttcattaagaacatgaTTACTGGAACATCCCAAGCTGATTGTGCTGTTCTCATCATTGATTCCACTACTGGTGGTTTTGAAGCTGGTATTTCTAAAGACGGACAGACCCGTGAACATGCTCTCCTTGCTTTCACTCTTGGTGTGAAGCAAATGATCTGCTGTTGCAACAAGATGGATGCCACTACACCCAAGTACTCTAAGGGTAGGTATGATGAAATTGTGAAGGAAGTTTCATCCTATTTGAAGAAGGTCGGCTATAACCCAGATAAAATTCCATTTGTTCCGATCTCTGGTTTTGAGGGAGACAACATGATTGAGCGCTCTACAAATCTTGACTGGTACAAGGGTCCAACCCTTCTTGAGGCCCTTGACCAAATCAACGAGCCTAAGAGGCCATCAGATAAGCCCCTCCGATTACCActtcaggatgtctacaagattGGAGGAATTGGAACTGTGCCTGTGGGACGTGTTGAGACTGGTTTCTTGAAACCTGGAATGGTGGTGACTTTTGCACCAACTGGACTGACTACTGAAGTCAAGTCCGTGGAGATGCACCATGAAGCTCTCCaagcgtaa 870 0.4322 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKGRYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGFLKPGMVVTFAPTGLTTEVKSVEMHHEALQA 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03059 289 CDD EF1_alpha_II 230 289 - -
Tsu01g03059 289 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 5 230 IPR000795 GO:0003924|GO:0005525
Tsu01g03059 289 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 249 IPR027417 -
Tsu01g03059 289 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 61 76 IPR031157 -
Tsu01g03059 289 Gene3D Translation factors 229 289 - -
Tsu01g03059 289 CDD EF1_alpha 9 227 - -
Tsu01g03059 289 PANTHER TRANSLATION FACTOR 1 288 - -
Tsu01g03059 289 PRINTS GTP-binding elongation factor signature 9 22 IPR000795 GO:0003924|GO:0005525
Tsu01g03059 289 PRINTS GTP-binding elongation factor signature 68 76 IPR000795 GO:0003924|GO:0005525
Tsu01g03059 289 PRINTS GTP-binding elongation factor signature 88 98 IPR000795 GO:0003924|GO:0005525
Tsu01g03059 289 PRINTS GTP-binding elongation factor signature 104 115 IPR000795 GO:0003924|GO:0005525
Tsu01g03059 289 PRINTS GTP-binding elongation factor signature 148 157 IPR000795 GO:0003924|GO:0005525
Tsu01g03059 289 PANTHER ELONGATION FACTOR 1-ALPHA-LIKE 1 288 - -
Tsu01g03059 289 SUPERFAMILY Translation proteins 231 288 IPR009000 -
Tsu01g03059 289 Pfam Elongation factor Tu GTP binding domain 6 222 IPR000795 GO:0003924|GO:0005525
Tsu01g03059 289 Gene3D - 1 226 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03059 Tsu-Chr1 37558601 37559559 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03059 1 287 Eukaryotic Initiation Factors Gene Family AT5G60390 97.909 0.0 588
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g03059 K03231 - thj:104815751 581.252