Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g03050 ATGAATTCAAGTGAAGAAGGTGGTGGTGATGATAATCAAGGAAAAAAACGTTCTTATGAATGCACATTTTGCAAAAGAGGtttcacaaatgctcaagcttTAGGTGGCCACATGAATATTCATAGGAAAGATAGATCACAGGCTTCTAAGCAAtcaaattcttcttcatcatcacaaaTTGCAAACAAATTCTTCACTAATGATGAAGATGTGGCTTTTCCTTATGCTAATTTAGAACAACCTATGAGTCAAACCTTTGATCATGGCATGTATTTTCAACATCAATATTTACCAACACCACCACCAAATAATTACCTTGTTGGAAATAATTATTACCAACCTTCAAATGTGCATGGTTTTGGATATGAACATCCAAGATCATCAAATTGGTCTAATTTGCATTTTAATCAAGAGCATCAAGGTTCTAATTTGAGTCTTCAAATTGGTTCAAGTCAGCATTATGTGGATAACACTCATCGTCAAAGAATTAGGAGAGGAAATGATGAGGAAGAAAATGAAGTGGATTTGGAGCTAAGACTTGGCCATGATCCATGA 555 0.3225 MNSSEEGGGDDNQGKKRSYECTFCKRGFTNAQALGGHMNIHRKDRSQASKQSNSSSSSQIANKFFTNDEDVAFPYANLEQPMSQTFDHGMYFQHQYLPTPPPNNYLVGNNYYQPSNVHGFGYEHPRSSNWSNLHFNQEHQGSNLSLQIGSSQHYVDNTHRQRIRRGNDEEENEVDLELRLGHDP 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g03050 184 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 9 184 - -
Tsu01g03050 184 SMART c2h2final6 19 41 IPR013087 -
Tsu01g03050 184 ProSiteProfiles Zinc finger C2H2 type domain profile. 19 46 IPR013087 -
Tsu01g03050 184 Pfam C2H2-type zinc finger 19 43 - -
Tsu01g03050 184 ProSitePatterns Zinc finger C2H2 type domain signature. 21 41 IPR013087 -
Tsu01g03050 184 PANTHER OS07G0101800 PROTEIN 9 184 - -
Tsu01g03050 184 SUPERFAMILY beta-beta-alpha zinc fingers 16 46 IPR036236 -
Tsu01g03050 184 Gene3D Classic Zinc Finger 8 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g03050 Tsu-Chr1 37454581 37455135 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g03050 8 181 C2H2 Transcription Factor Family AT3G09290 29.310 1.09e-15 69.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tsu01g03050 zf-C2H2_6 1.9e-05 CL0361