Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02998 atgGATTCAAGTTCAACCTCAATTCCAAACTGTTCCACTTCAGATTTCTCCTCAGAATCCACTTCCTTCGAATTTGATTATCTTCCTTTCAACGAGAACGATCCCGAAGAGATGCTTCTCTATGGCATGATCAATGATGCAAACAATAacaccaccaacaacaacacaaGGGTTAAGGAAGAAGAAGTAAGTTCCGAAGAGAACGAACCGAGGAAGGAGAAGTCATACCGAGGTGTTAGGAGAAGACCATGGGGGAAATTTGCAGCAGAGATAAGGGATTCAACTAGAAATGGAATGAGGGTATGGTTAGGAACATTTGATAGTGCTGAAGAAGCTGCTTTAGCTTATGATCAAGCTGCTTTTTCTATGAGGGGTTCTGCTGCAATACTCAATTTTCCGGTTGAGATTGTGAGAGAATCGCTTAgtgaaatgaaaatgaattgtggTGATGGTTCTGAAGATGGGTGTTCACCTGTTGTTGCTTTAAAGAGGAAACATTCTTTGAGAAGGAAAATTGGTttcaagaagaacaaagaaaaagattACGGGAACAATAATAATAGTGTTGTGTTTGAAGATCTTGGTTCTGATTATTTGGAACAATTGTTGATGTCTTCTGATAAATTTCCTTGTACTCAGTGA 642 0.3536 MDSSSTSIPNCSTSDFSSESTSFEFDYLPFNENDPEEMLLYGMINDANNNTTNNNTRVKEEEVSSEENEPRKEKSYRGVRRRPWGKFAAEIRDSTRNGMRVWLGTFDSAEEAALAYDQAAFSMRGSAAILNFPVEIVRESLSEMKMNCGDGSEDGCSPVVALKRKHSLRRKIGFKKNKEKDYGNNNNSVVFEDLGSDYLEQLLMSSDKFPCTQ 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02998 213 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 25 205 - -
Tsu01g02998 213 MobiDBLite consensus disorder prediction 46 77 - -
Tsu01g02998 213 MobiDBLite consensus disorder prediction 1 21 - -
Tsu01g02998 213 CDD AP2 74 134 IPR001471 GO:0003700|GO:0006355
Tsu01g02998 213 Pfam AP2 domain 75 125 IPR001471 GO:0003700|GO:0006355
Tsu01g02998 213 ProSiteProfiles AP2/ERF domain profile. 75 133 IPR001471 GO:0003700|GO:0006355
Tsu01g02998 213 MobiDBLite consensus disorder prediction 59 76 - -
Tsu01g02998 213 SUPERFAMILY DNA-binding domain 75 135 IPR016177 GO:0003677
Tsu01g02998 213 PANTHER DNA-BINDING DOMAIN 25 205 IPR044808 GO:0003700|GO:0009873
Tsu01g02998 213 Gene3D AP2/ERF domain 74 135 IPR036955 GO:0003700|GO:0006355
Tsu01g02998 213 PRINTS Ethylene responsive element binding protein signature 99 115 IPR001471 GO:0003700|GO:0006355
Tsu01g02998 213 PRINTS Ethylene responsive element binding protein signature 76 87 IPR001471 GO:0003700|GO:0006355
Tsu01g02998 213 SMART rav1_2 75 139 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02998 Tsu-Chr1 36744956 36745863 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02998 28 207 AP2-EREBP Transcription Factor Family AT3G23240 63.978 1.12e-75 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tsu01g02998 AP2 1.2e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02998 K14516 - gmx:100790598 246.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g02998 01 36744956 36745863 Tsu01g02998 01 36744956 36745863 ECH