Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02996 ATGGAGGATCACCAAAGGGGAAAGCAAGGAAAGGAGGAGAAGGCTGGAAAGGACGAGGTTCGGTTCCGAGGAGTGCGGAGGAGGCCATGGGGGAAGTACGCGGCAGAGATAAGAGATCCATCAAAGCAAGGGACAAGGCTATGGTTAGGGACATTTGATACGGCTGAAGAAGCAGCAAGAGCTTATGATAGAGCAGCTTTTAACTTGAGGGGTCATCttgcaattttgaattttcctAGTGAGTATTATTCTAAAATAAGAGGGTCACCACCATATCCACCTCATTTAGCACCCCCATCCTACACCTCTTCATCATCTCATCATGCTAGTGGTAGCTCTTCTGGGCCTCAACATAGGCCCATTTTTGAGTTTGAGTGTTTGGATGATAAGATATTGGAAGAACTACTTGGGTCAGAGGaggtgaagaaaaagaagtaG 438 0.4361 MEDHQRGKQGKEEKAGKDEVRFRGVRRRPWGKYAAEIRDPSKQGTRLWLGTFDTAEEAARAYDRAAFNLRGHLAILNFPSEYYSKIRGSPPYPPHLAPPSYTSSSSHHASGSSSGPQHRPIFEFECLDDKILEELLGSEEVKKKK 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02996 145 PANTHER DNA-BINDING DOMAIN 1 140 IPR044808 GO:0003700|GO:0009873
Tsu01g02996 145 Pfam AP2 domain 21 72 IPR001471 GO:0003700|GO:0006355
Tsu01g02996 145 MobiDBLite consensus disorder prediction 99 117 - -
Tsu01g02996 145 PANTHER ETHYLENE RESPONSE FACTOR 1 140 - -
Tsu01g02996 145 PRINTS Ethylene responsive element binding protein signature 22 33 IPR001471 GO:0003700|GO:0006355
Tsu01g02996 145 PRINTS Ethylene responsive element binding protein signature 45 61 IPR001471 GO:0003700|GO:0006355
Tsu01g02996 145 ProSiteProfiles AP2/ERF domain profile. 21 79 IPR001471 GO:0003700|GO:0006355
Tsu01g02996 145 MobiDBLite consensus disorder prediction 1 22 - -
Tsu01g02996 145 CDD AP2 21 79 IPR001471 GO:0003700|GO:0006355
Tsu01g02996 145 MobiDBLite consensus disorder prediction 87 120 - -
Tsu01g02996 145 Gene3D AP2/ERF domain 20 80 IPR036955 GO:0003700|GO:0006355
Tsu01g02996 145 SMART rav1_2 21 85 IPR001471 GO:0003700|GO:0006355
Tsu01g02996 145 SUPERFAMILY DNA-binding domain 22 80 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02996 Tsu-Chr1 36721915 36722352 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02996 19 143 AP2-EREBP Transcription Factor Family AT3G23230 65.600 4.16e-51 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Tsu01g02996 AP2 8e-17 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02996 - - gmx:100793703 204.142