Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02989 ATGAGTGAAGATGGATCAAAGGGAAGGACCAAGGACGATGGCGGACATGTCCGGTACCGAGGCGTTCGTTGTCGGCCTTGGGGGAAGTTTGCGGCCGAGATTCGTGACTCCAATAGACAAGGTCAGAGAGTTTGGCTTGGAACTTTCAATACCGCCGAGGAAGCGGCTAGAGCATATGATAGAGCTGCTTATAATATGAGAGGTACATTTGCAATCCTTAATTTTCCGAATGAATACAATATGCCAACCCGTGCCGGTTCCGGTTCCACTTCtgcttcatcatcttcttcaaggAATACAAATGTGGAAGGCAAAGGAAGACAAGTGTTTGAGATTGAGTACTTGGATGATAAGTTGTTGGAAGAGCTTCTTGATTTTGAAGAGAAAAGACATAAAGGACCCTAA 405 0.4321 MSEDGSKGRTKDDGGHVRYRGVRCRPWGKFAAEIRDSNRQGQRVWLGTFNTAEEAARAYDRAAYNMRGTFAILNFPNEYNMPTRAGSGSTSASSSSSRNTNVEGKGRQVFEIEYLDDKLLEELLDFEEKRHKGP 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02989 134 SUPERFAMILY DNA-binding domain 18 77 IPR016177 GO:0003677
Tsu01g02989 134 Pfam AP2 domain 18 68 IPR001471 GO:0003700|GO:0006355
Tsu01g02989 134 Gene3D AP2/ERF domain 17 77 IPR036955 GO:0003700|GO:0006355
Tsu01g02989 134 MobiDBLite consensus disorder prediction 82 104 - -
Tsu01g02989 134 PANTHER DNA-BINDING DOMAIN 12 128 IPR044808 GO:0003700|GO:0009873
Tsu01g02989 134 CDD AP2 18 77 IPR001471 GO:0003700|GO:0006355
Tsu01g02989 134 SMART rav1_2 18 82 IPR001471 GO:0003700|GO:0006355
Tsu01g02989 134 PRINTS Ethylene responsive element binding protein signature 42 58 IPR001471 GO:0003700|GO:0006355
Tsu01g02989 134 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Tsu01g02989 134 PANTHER OS09G0571700 PROTEIN 12 128 - -
Tsu01g02989 134 ProSiteProfiles AP2/ERF domain profile. 18 76 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02989 Tsu-Chr1 36673896 36674300 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02989 13 130 AP2-EREBP Transcription Factor Family AT3G23230 61.905 1.66e-43 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tsu01g02989 AP2 8.3e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02989 - - aip:107615822 173.711