Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02986 ATGGATCTTGTAAGTAGAAGATTCTTGATCCATTTTTCATCACATGTGACACAATCACAATCACAAGCTTTTTCTCCAAGTTCAAGTTCAAGTTCAATTTTTCATCCTCATATGCATCATTCTAACACAAGTTTTCCCATTATTGCAATTGCTATAATAGGAATATTAGCTACAGCTTTCTTGCTTGTTTCCTACTACATCTTTGTGATCAAATGTTGTCTCAATTGGCACCGTATCGATCTTCTAAGACGATTCTCTCCGTCTAGAAGGCGACAAGATCCAACAACAATATACTCACCGGGGACAGAACCTCGCGGTTTAGATGAAGCAGTGATTCGGTTAATTCCGGTGATTCAATTCAAAACAGAAGAAGGGAATAATAGAGATTTTTGTGAATGTGCTGTTTGTTTGAATGAGTTTCAACAAGATGAAAAACTTAGGATTATACCAAATTGTAGCCATGTTTTTCACATTGATTGCATTGATGTTTGGCTTCAAAACAATGCTAATTGTCCACTTTGTAGAACAAGCATTTCATTGACAAATAGATTCAACTTTGATCAAATGCTTACACAAGGACCTTTTTCTACTCAAGATCAAAATCCAATTAGTGAAAATCTCATTGTTGGTGATGaagattttgttgttattgaatTAAGTAACAATAATGGTTTAGATTTACCATTACCATTACCATTACCAATACCAAGACCAAATTCTATTAGTCCTTCACCAAGGAAATTATTGGAGCAAAGAAATGttgaaaagaaaggaaaaaagttgaaaaaagtaACAAGTATGGGAGATGAATGTATTGATATTAGAGCAACAAAAGATGATCGATTTTCAGTTCAACCAATTAGAAGATCTTTTTCAATGGATTCATCAAGTGATAGACAATTCTATTTAGCAGTTCAAGAAGCTCTACATCAACAAAAGTGGCAAATCAATGAAGTCAATAACACCATTATTGAAGGATGTAGTAATGGTAGAGCTAAGAAATCATTCTTTTCATTTGGATATGGAAGTAGATCCAGAAGTTCTGTTCAACCTGTTTATTTGGACTCttga 1071 0.3249 MDLVSRRFLIHFSSHVTQSQSQAFSPSSSSSSIFHPHMHHSNTSFPIIAIAIIGILATAFLLVSYYIFVIKCCLNWHRIDLLRRFSPSRRRQDPTTIYSPGTEPRGLDEAVIRLIPVIQFKTEEGNNRDFCECAVCLNEFQQDEKLRIIPNCSHVFHIDCIDVWLQNNANCPLCRTSISLTNRFNFDQMLTQGPFSTQDQNPISENLIVGDEDFVVIELSNNNGLDLPLPLPLPIPRPNSISPSPRKLLEQRNVEKKGKKLKKVTSMGDECIDIRATKDDRFSVQPIRRSFSMDSSSDRQFYLAVQEALHQQKWQINEVNNTIIEGCSNGRAKKSFFSFGYGSRSRSSVQPVYLDS 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02986 356 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 98 180 IPR013083 -
Tsu01g02986 356 SUPERFAMILY RING/U-box 126 181 - -
Tsu01g02986 356 SMART ring_2 133 174 IPR001841 -
Tsu01g02986 356 CDD RING-H2_PA-TM-RING 132 175 - -
Tsu01g02986 356 PANTHER RING-H2 FINGER PROTEIN ATL16 22 355 IPR044600 GO:0016567|GO:0016740
Tsu01g02986 356 ProSiteProfiles Zinc finger RING-type profile. 133 175 IPR001841 -
Tsu01g02986 356 Pfam Ring finger domain 132 175 IPR001841 -
Tsu01g02986 356 PANTHER RING-H2 FINGER PROTEIN ATL16 22 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02986 Tsu-Chr1 36626049 36627292 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02986 36 355 C3H Transcription Factor Family AT1G04360 51.541 1.60e-99 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02986 - - gmx:100794749 450.284