Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02969 ATGTTAGGAGGGTTATCTGGGGTTGACCCAGGAGCCCATTCACCAACAGGTCTAAACAAACACCATAACACAAACCTAACAATCAACGAAAATCgcgatgaagatgaagaagaagaagatgacgACAACAGAGACGAACCAAGAGAAGGTGCAGTCGAAGTTGGAAACCGAAGACCTAGAGGAAGACCACCTGGATCCAAAAACAGACCAAAACCACCTATCTTTGTGACAAGAGATAGTCCAAATGCTTTAAAGAGCCACGTCATGGAGGTAGCTGGTGGAGCCGACATAGCAGAAAGTGTAGCGCAGTTTGCAAGGCGGCGTCAACGAGGTGTTTGTGTTCTAAGTGGAAGTGGAACTGTGGCTAATGTTACTCTTAGACaaccttcagctcctggtgctgtTGTAGCACTTCATGGTAGATTTGAGATTTTGTCCTTAACTGGGACGTTTCTACCTGGTCCTGCTCCACCAGGTTCAACTGGTCTTACAGTGTATCTGGCTGGAGGACAGGGTCAGGTAGTTGGAGGTTGTGTTGTTGGAACACTTGTTGCTGTTGGACCAGTCATGCTTATTTCTGCTACTTTTACTAATGCAACTTATGAGAGACTTCCACTTGACGacgatgataatgataataataacgAAGGGCCTAGTTCTGCGGCCGGTGTACAAGGTGGAGGAACCTCCGGTGGATCACCTCCTCCGGGAATTGGTCATCATCAGTTGCAGCAAGGTGGGATTCCAGATCCATCTTCGATGCATCCTTTGTATAATTTGCCACCAAATTTGTTGCCTAATAATGGAGGGCAGATGGGACATGAAGCACTTGCTTgggctgctgctgctgctggtCATGGAAGGCCACTTTATTGA 876 0.4189 MLGGLSGVDPGAHSPTGLNKHHNTNLTINENRDEDEEEEDDDNRDEPREGAVEVGNRRPRGRPPGSKNRPKPPIFVTRDSPNALKSHVMEVAGGADIAESVAQFARRRQRGVCVLSGSGTVANVTLRQPSAPGAVVALHGRFEILSLTGTFLPGPAPPGSTGLTVYLAGGQGQVVGGCVVGTLVAVGPVMLISATFTNATYERLPLDDDDNDNNNEGPSSAAGVQGGGTSGGSPPPGIGHHQLQQGGIPDPSSMHPLYNLPPNLLPNNGGQMGHEALAWAAAAAGHGRPLY 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02969 291 Pfam Plants and Prokaryotes Conserved (PCC) domain 86 197 IPR005175 -
Tsu01g02969 291 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 19 14 282 - -
Tsu01g02969 291 MobiDBLite consensus disorder prediction 203 262 - -
Tsu01g02969 291 CDD DUF296 85 168 IPR005175 -
Tsu01g02969 291 MobiDBLite consensus disorder prediction 31 46 - -
Tsu01g02969 291 PIRSF ESCAROLA 4 291 IPR014476 GO:0003680
Tsu01g02969 291 MobiDBLite consensus disorder prediction 1 81 - -
Tsu01g02969 291 Gene3D - 85 212 - -
Tsu01g02969 291 ProSiteProfiles PPC domain profile profile. 81 218 IPR005175 -
Tsu01g02969 291 SUPERFAMILY AF0104/ALDC/Ptd012-like 82 209 - -
Tsu01g02969 291 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 14 282 IPR014476 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02969 Tsu-Chr1 36277189 36278210 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02969 4 291 AT-hook Motif Nuclear Localized (AHL) Family AT4G14465 57.966 1.21e-92 274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02969 - - var:108341460 326.635