Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02967 ATGGTAAAAGCAATAGTAACTTTGCTGTTGATTTCATCTATCCTTTTATGTGTATCTGCAACAGATAATGGATTTCCAAGATGTAATTGTGACGACGAGACCAGTTTATGGACTATTGAGAGCATTTTGGAGTGTCAAAGAGTTGGTGATTTCTTGATTGCTGTGGCCTACTTCTCAATTCCTATTGAATTGCTTTATTTCGTCAGTTGTTCGAACGTCCCTTTCAAATGGGTCCTTGTTCAGTTCATTGCCTTCATTGTACTATGTGGATTGACACATTTGTTGAATGGTTGGACTTATGGTCCTCACACTTTTCAGCTTATGGTGGCACTTACTGTCTTTAAGATTCTCACTGCCTTGGTGTCTTGTGCTACTGCGATAACTCTTGTCACTTTGATTCCTTTACTTCTCAAAGTGAAGGTTAGGGAATTCATGCTCAAGAAGAAGACATGGGATCTTGGACGGGAGGTTGGTCTTATTATGAAGCAAAAGGAGGCTGCAATGCATGTAAGAATGCTTACTCAGGAGATTCGCAAGTCACTCGATAGACATACAATTCTCTATACCACTTTGGTGGAGCTTTCTAAAACACTAGGCTTGCAAAATTGTGCTGTGTGGATGCCGAATGAAGAAAAGACAGTGATGAATCTCACTCATGAATTGAACGGAaggaatttaaatttttctataccAATTACTGATTCAGATGTTGTAAAAATCAAGGGAAGCAATGGAGTGAATGTACTTAGCTCTGACTCGGCCCTTGCTGTTTCCAGTTGTGGAGTTTCTGTTGATGCAGGACCGGTTGCTGCGATCCGAATGCCAATGTTACGTGTTTGTAATTTCAAAGGAGGAACACCTGAGTTAACTCAGGCGTGTTATGCGATATTGGTCTTGATTCTTCCGGCTGGTGAGCCTAGATCTTGGAGCAATCAGGAGCTGGAGATAATTAAGGTGGTTGCAGATCAGGTCGCCGTGGCTCTATCCCATGCTGCAATTCTTGAAGAGTCTCAACTTATGAGAGAGAAGTTGGAAGAGCGCAATCGAGCTTTGCAACAGGCAAGAAGGAATGCTATGATGGCAAGTCAGGCAAGAAGCTCATTTCAGAAAGTCATGAGTGATGGTATGAGGAGGCCTATGCACTCAATTTTGGGATTGCTTTCAATGGTACAAGAAGATAACTTAAAGAATGAACAGAAACTTATTGTGGATGCAATGCTAAGGACGAGCAATGTCCTATCGAACTTGATAAATGATGCCATGGACAGCTCTGCAAAGGATGATGGAAGATTTCCTTTGGAGATAAGGTCTTTTGGGTTACACTCCATGATAAAAGAAGCAGCTTGCCTCGCCAAATGCATGTGTGTTTATAAGGGCTTGGGTTTCATGGTCGAGGTTGACAAGTCTTTACCGAACAATGTTATGGGTGATGAGAGGAGGGTTTTTCAGGTGATTTTGCATATGGTTGGGAATCTACTGGATTGCAATCATGGGGAAGGAGGGATCCTTGTGTTCCGGGTTTCGGCAGATACTGGAAGTCAAGGAAGGAATGACAAAGGGTGGTCAACTTGGAGACCAAGCTCATCAAGCGGTGATGTAAATATTAGATTTGAGATAGGGATCAACAGTAGCGATTCTGAAGTTGGGAGCTCAGTTTCCTCGGGACTCGGGAGTAGGACATATACCAGTGATAGGTATGAAGGCAGATTGAGCTTTAGTATTTGCAAGAGGATAGTCCAGTTGATGCAAGGAAACTTATGGTTGGTACCATATACTCATGGTATTCCTCAAAGCATGACACTTCTTCTTCGGTTTCAATTACGGCCATCCATTGCAATAGCCATCTCTGAACCCGGAGAATCTTCCGAACGCAACTATTCCAATTCAATGTTGAGAGGTCTGCAAGTTCTGTTAGTTGACAACGACGATGTAAATAGAGCAGTGACACAAAAACTGCTTCAGAAACTCGGTTGTTCCGTGACTTCCGCTTCTTCGGGATTCGAATGTCTTACTGTCATTGGACCTGTTGGATCTTCCATCCAAGTCATTCTTTTGGATCTCCAAATGCCTGATATAGACGGCTTCGAAGTCGCAGCAAGGATTCGGAAGTTTAAAAGTGGAAATAGGCCTATCATTATTGCGTTAACCGCAAGTGCAGAAGAAGATTTGTGGGAAAGGTGTATGCAGATTGGTGTTAACGGAGTAATCCGAAAACCGGTTTTGTTGCAAGGAATTGCTAGTGAACTCAGAAGAATTCTTATGCAAGGAAATATATAG 2277 0.4216 MVKAIVTLLLISSILLCVSATDNGFPRCNCDDETSLWTIESILECQRVGDFLIAVAYFSIPIELLYFVSCSNVPFKWVLVQFIAFIVLCGLTHLLNGWTYGPHTFQLMVALTVFKILTALVSCATAITLVTLIPLLLKVKVREFMLKKKTWDLGREVGLIMKQKEAAMHVRMLTQEIRKSLDRHTILYTTLVELSKTLGLQNCAVWMPNEEKTVMNLTHELNGRNLNFSIPITDSDVVKIKGSNGVNVLSSDSALAVSSCGVSVDAGPVAAIRMPMLRVCNFKGGTPELTQACYAILVLILPAGEPRSWSNQELEIIKVVADQVAVALSHAAILEESQLMREKLEERNRALQQARRNAMMASQARSSFQKVMSDGMRRPMHSILGLLSMVQEDNLKNEQKLIVDAMLRTSNVLSNLINDAMDSSAKDDGRFPLEIRSFGLHSMIKEAACLAKCMCVYKGLGFMVEVDKSLPNNVMGDERRVFQVILHMVGNLLDCNHGEGGILVFRVSADTGSQGRNDKGWSTWRPSSSSGDVNIRFEIGINSSDSEVGSSVSSGLGSRTYTSDRYEGRLSFSICKRIVQLMQGNLWLVPYTHGIPQSMTLLLRFQLRPSIAIAISEPGESSERNYSNSMLRGLQVLLVDNDDVNRAVTQKLLQKLGCSVTSASSGFECLTVIGPVGSSIQVILLDLQMPDIDGFEVAARIRKFKSGNRPIIIALTASAEEDLWERCMQIGVNGVIRKPVLLQGIASELRRILMQGNI 758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02967 758 Coils Coil 334 361 - -
Tsu01g02967 758 PANTHER TWO-COMPONENT SENSOR HISTIDINE KINASE 10 757 - -
Tsu01g02967 758 Gene3D - 172 327 IPR029016 -
Tsu01g02967 758 Gene3D - 634 757 - -
Tsu01g02967 758 ProSiteProfiles Response regulatory domain profile. 635 753 IPR001789 GO:0000160
Tsu01g02967 758 PANTHER ETHYLENE RESPONSE SENSOR 2 10 757 - -
Tsu01g02967 758 Gene3D - 328 427 - -
Tsu01g02967 758 Gene3D - 428 606 IPR036890 -
Tsu01g02967 758 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 349 430 IPR036097 GO:0000155|GO:0007165
Tsu01g02967 758 SMART REC_2 634 753 IPR001789 GO:0000160
Tsu01g02967 758 SUPERFAMILY CheY-like 631 753 IPR011006 -
Tsu01g02967 758 SMART HisKA_10 364 429 IPR003661 GO:0000155|GO:0007165
Tsu01g02967 758 CDD HATPase_ETR2_ERS2-EIN4-like 470 603 - -
Tsu01g02967 758 CDD HisKA 362 424 IPR003661 GO:0000155|GO:0007165
Tsu01g02967 758 PIRSF Ethylen_sen_hybr_HK 1 758 IPR014525 GO:0004672|GO:0005789|GO:0009723|GO:0038199|GO:0051740
Tsu01g02967 758 CDD REC_ETR-like 634 749 - -
Tsu01g02967 758 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 476 592 IPR003594 -
Tsu01g02967 758 Pfam GAF domain 182 328 IPR003018 GO:0005515
Tsu01g02967 758 ProSiteProfiles Histidine kinase domain profile. 371 586 IPR005467 -
Tsu01g02967 758 Pfam Response regulator receiver domain 636 743 IPR001789 GO:0000160
Tsu01g02967 758 SUPERFAMILY GAF domain-like 185 331 - -
Tsu01g02967 758 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 418 591 IPR036890 -
Tsu01g02967 758 SMART gaf_1 182 338 IPR003018 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02967 Tsu-Chr1 36251879 36256286 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02967 22 753 Miscellaneous Gene Families AT3G04580 58.333 0.0 831
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Tsu01g02967 HATPase_c 1.8e-06 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02967 K14509 - gmx:100787425 1280.77