Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02955 ATGGATTCGGATCAGGGAAAGCTTTTCATCGGTGGGATTTCATGGGATACTAATGAGGAGAAGCTGAAGGAGCATTTCAGTAATTATGGTGATGTTTTGAACACTTCAGTtatgagagagaagaacactGGAAAACCTAGAGGCTTTGGTTTCGTTGTTTTTTCAGATCCTTCTGTTCTTGATAGGGTTCTTGAAGACAAGCATGTTATTGATGGCAGAACGGTTGATGCCAAGAGGGCGTTCTCAAGAGAAGATCAACAAATTTCTGTCAATTCGAGAACTGGAAACTCCAATTCTGGTATGAATTCGGGTAATGGTGGGAATATGAGGACAAAAAAGATATTTGTTGGAGGGTTACCTCCCACTCTGGCTGAAGAAAAATTTCGTCAGTACTTTGAGGCTTATGGACTTGTAACTGATGTTGTAGTCATGTATGACCAGAATACTGGACGACCACGAGGATTTGGGTTTATTACATTTGATACTGAGGAGGCAGTTGATAGGGTTTTGCACAAGACATTTCATGATTTAAATGGTAAACAAGTAGAGGTAAAGCGTGCACTTCCAAAGGATGCCAATCCAGGTTCAAATAGCCGAATGATGGGTGGTGCTGGAGGGGGAAATGCTGGAATGGGTGGTTATCAAGGGTACGGGGCTTCTGGTGGCAACCAAAATGCATATGATGGTCGTTCGGATTCTAGTAGGTATATGCAGCCTCAAAGTGCTGCAGGTGGATTCCCACCGTATGGATCCTCCGCTTATAGTGCTGCTGCTGCTGGATATGGGTATGGTTCGGCTAGCAATGGCCTTGGTTATGGTGCATATGGAAGTTATGGTGCTGCTGCTGCTGGTTATGGGGGACCTGCTGCTGCAACGTATGGGAACCCAAATGTTCCTAATGCTGCTTATGCTGCTGGTGGCCCAAGGAGTTCATGGCCTGCTCAGGCTCCCTCTGGCTATGGCTCTATTGGTTATGGTAACACTGCTCCTTGGGGTGCTCCAAGTGGGGGTGCTGGATCTGGTTCAACAACTGCAGGTCAATCTCCTAGTGCAGCTGCTGGATATGGGAATCAAGGTTATGGCTATGGTGGTTATGGCAGCGGGTATGGTGGAAGTGATAATTCTTATGGGAATCCAGGTGTATATGGTGCTGTTGGCGGGCGTACTGGGAGTGCTCCAAATAGTAATGCCAGTGGTCAGGGTGGTAGTGAACTGCAAGGTAGTGGTGGCAGTGGCAGCTATATAGGCAGCGGCTATGGGGATGCAAATGGAAATTCTGGTTATGCAAATGCAGCATGGAGATCTGAACAGGCTCAAGCATCTGGTAATTATGGGACTCCTCAGGGAAATGGTGGGCAAGTTGGTTATGGTGGTGGCTATGGTGGTGCTCAGTCTCGACAAGCCCAACAGCAGTAA 1416 0.4661 MDSDQGKLFIGGISWDTNEEKLKEHFSNYGDVLNTSVMREKNTGKPRGFGFVVFSDPSVLDRVLEDKHVIDGRTVDAKRAFSREDQQISVNSRTGNSNSGMNSGNGGNMRTKKIFVGGLPPTLAEEKFRQYFEAYGLVTDVVVMYDQNTGRPRGFGFITFDTEEAVDRVLHKTFHDLNGKQVEVKRALPKDANPGSNSRMMGGAGGGNAGMGGYQGYGASGGNQNAYDGRSDSSRYMQPQSAAGGFPPYGSSAYSAAAAGYGYGSASNGLGYGAYGSYGAAAAGYGGPAAATYGNPNVPNAAYAAGGPRSSWPAQAPSGYGSIGYGNTAPWGAPSGGAGSGSTTAGQSPSAAAGYGNQGYGYGGYGSGYGGSDNSYGNPGVYGAVGGRTGSAPNSNASGQGGSELQGSGGSGSYIGSGYGDANGNSGYANAAWRSEQAQASGNYGTPQGNGGQVGYGGGYGGAQSRQAQQQ 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02955 471 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 189 IPR000504 GO:0003723
Tsu01g02955 471 SUPERFAMILY RNA-binding domain, RBD 111 218 IPR035979 GO:0003676
Tsu01g02955 471 Gene3D - 108 232 IPR012677 -
Tsu01g02955 471 MobiDBLite consensus disorder prediction 83 108 - -
Tsu01g02955 471 SMART rrm1_1 113 185 IPR000504 GO:0003723
Tsu01g02955 471 SMART rrm1_1 7 78 IPR000504 GO:0003723
Tsu01g02955 471 MobiDBLite consensus disorder prediction 84 108 - -
Tsu01g02955 471 SUPERFAMILY RNA-binding domain, RBD 3 110 IPR035979 GO:0003676
Tsu01g02955 471 MobiDBLite consensus disorder prediction 436 471 - -
Tsu01g02955 471 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Tsu01g02955 471 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 172 IPR000504 GO:0003723
Tsu01g02955 471 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 1 469 - -
Tsu01g02955 471 MobiDBLite consensus disorder prediction 185 204 - -
Tsu01g02955 471 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Tsu01g02955 471 MobiDBLite consensus disorder prediction 436 450 - -
Tsu01g02955 471 CDD RRM2_DAZAP1 110 189 IPR034131 GO:0003723
Tsu01g02955 471 Gene3D - 1 92 IPR012677 -
Tsu01g02955 471 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 95 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02955 Tsu-Chr1 35960698 35963710 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02955 8 200 Eukaryotic Initiation Factors Gene Family AT2G23350 21.649 8.65e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02955 K14411 - gmx:100811267 586.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g02955 01 35960698 35963710 Tsu01g02955 01 35960698 35963710 ECH