Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02945 ATGTTGCATGACGTTTTTGATCAGCCACTGCCACCAAATTCAAAGGTagagcagcaacaacaacaacatcatcaacaacaacaacaactttccATTGATGAAATTTCAAGCCCTCTTAGCGCTCGGATTTTCGAGCTTTGTAACCCTGAATTGTTTCCAGAAGCTTTGCAGAATTCTGAGGTTACATCAAGCTCAAATTGTTGCTATGAAGAGAATTCATCATATGCAACAAATATATTAGATGTAGAAACTAAGTTCAATAATAGCAATAGCAATAATAATACAGTAGTCACAACAACTCCAACTAGcaccaacaataacaacaacaattccAACAATAGCAATAATCTTTCTGTTATCTTTGATtcgcaagaagaaattgacaatgACATTTCTGCATCAATAGATTTCTCACTCTCACCATCTTTCAATGTTCCTTCATTCTTACCAGTCACATCATCACAACAAGAACAATTTGATTTCAATTCTCATGTTCAACAACTAACATCATGTTCATCTGTTGAAGGGTTCTCACAGTTTCATAATCCAAATGATTCAGTTACACCTCTTTTGGGACCTTCATTGTCATTACCACCTGTTTTTGAAGAAGATTGCATAACTTCTGTACCCTCTTATGTTCCTTTGAACCCTTCTTCTCCTTCTTGCAATTATCTTAGCCCGGCTGGAATGGCGTCATATATGCCGCCTCCGCCTGGTTCTCTTGCTACTTCTTTGTCTGATAGTGCTGCTTTGTTTGGTGGAAATATGCTTCTTGGTTCTGAACTTCAAACTCAAGAACTTGATTATCAAGGAGATAATGGTAGAATGTATTGTCCTGATCCTATTCAGAGGGTGTTTAACCCTCCTGATCTTCAGGCACTTAATACTGAGAATCAACAACTAGTAGTTGGTTCTGGTAGTTCTGCCAGTTTGACACCAGAAATCTCAAATTTGGAGGACTCAACTTTTAAGGTTGGAAAACTTTCTGTTGaacaaaggaaagaaaagatTCATAGATACATGaagaaaagaaatgaaagaaatttCAGCAAGAAAATTAAGTATGCATGCCGAAAAACTTTGGCTGATAGCCGGCCTCGAGTTAGAGGAAGATTTGCAAagaatgatgattttggagATGCACAAAGAACTGCTAGTGGCAatcatgaagaagaagatgaagaagagGTAGCTGTGAAAGAGGAAGATGATATGGTTGATTCCTCAGATATATTTGCTCATATCAGTGGAGTGAATTCCTTCAAATGCAACTATTCCATCCAATCATGGATTTGA 1296 0.3279 MLHDVFDQPLPPNSKVEQQQQQHHQQQQQLSIDEISSPLSARIFELCNPELFPEALQNSEVTSSSNCCYEENSSYATNILDVETKFNNSNSNNNTVVTTTPTSTNNNNNNSNNSNNLSVIFDSQEEIDNDISASIDFSLSPSFNVPSFLPVTSSQQEQFDFNSHVQQLTSCSSVEGFSQFHNPNDSVTPLLGPSLSLPPVFEEDCITSVPSYVPLNPSSPSCNYLSPAGMASYMPPPPGSLATSLSDSAALFGGNMLLGSELQTQELDYQGDNGRMYCPDPIQRVFNPPDLQALNTENQQLVVGSGSSASLTPEISNLEDSTFKVGKLSVEQRKEKIHRYMKKRNERNFSKKIKYACRKTLADSRPRVRGRFAKNDDFGDAQRTASGNHEEEDEEEVAVKEEDDMVDSSDIFAHISGVNSFKCNYSIQSWI 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02945 431 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 32 431 - -
Tsu01g02945 431 MobiDBLite consensus disorder prediction 1 30 - -
Tsu01g02945 431 ProSiteProfiles CCT domain profile. 333 375 IPR010402 GO:0005515
Tsu01g02945 431 Pfam CCT motif 333 375 IPR010402 GO:0005515
Tsu01g02945 431 MobiDBLite consensus disorder prediction 368 390 - -
Tsu01g02945 431 PANTHER CCT MOTIF FAMILY PROTEIN 32 431 - -
Tsu01g02945 431 MobiDBLite consensus disorder prediction 12 30 - -
Tsu01g02945 431 MobiDBLite consensus disorder prediction 368 404 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02945 Tsu-Chr1 35840021 35843741 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02945 313 377 C2C2-CO-like Transcription Factor Family AT5G24930 41.538 5.46e-11 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Tsu01g02945 CCT 5.7e-19 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02945 - - aprc:113871720 557.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g02945 01 35840021 35843741 Tsu01g02945 01 35840021 35843741 ECH