Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02936 ATGAGTGGAGATGGATCAAGGGGAAAGGCAAAGGACGACGTCCGCTACCGAGGTGTTAGATGCCGACCATGGGGGAAGTTCGCGGCCGAGATTCGTGACTCCAATAACCAAGGTCAGAGGATTTGGCTAGGAACTTTCAACACGGCCGAGGAAGCCGCTAGAGCTTATGATAGAGCTGCTTATGATATGCGAGGCTCATCTGCAATCCTTAATTTTCCAAATGAATACAATATGCCGGTTAGTGCCGGCTACGGTACCACTTCTGCTTCATCATCTACATCTTCTTCGTCTTCAAGAAATGCAAATGTGGGAAGCGGAGGAAGACAAGTGTTTGAGTTTGAGTACTTGGATGATAAGTTGTTGGACGAGCTTCTTgattttgaagagaaaaaaaaataa 399 0.4486 MSGDGSRGKAKDDVRYRGVRCRPWGKFAAEIRDSNNQGQRIWLGTFNTAEEAARAYDRAAYDMRGSSAILNFPNEYNMPVSAGYGTTSASSSTSSSSSRNANVGSGGRQVFEFEYLDDKLLDELLDFEEKKK 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02936 132 CDD AP2 15 74 IPR001471 GO:0003700|GO:0006355
Tsu01g02936 132 PANTHER DNA-BINDING DOMAIN 8 128 IPR044808 GO:0003700|GO:0009873
Tsu01g02936 132 PANTHER ETHYLENE RESPONSE FACTOR 8 128 - -
Tsu01g02936 132 SMART rav1_2 15 79 IPR001471 GO:0003700|GO:0006355
Tsu01g02936 132 Gene3D AP2/ERF domain 14 74 IPR036955 GO:0003700|GO:0006355
Tsu01g02936 132 MobiDBLite consensus disorder prediction 82 105 - -
Tsu01g02936 132 PRINTS Ethylene responsive element binding protein signature 39 55 IPR001471 GO:0003700|GO:0006355
Tsu01g02936 132 PRINTS Ethylene responsive element binding protein signature 16 27 IPR001471 GO:0003700|GO:0006355
Tsu01g02936 132 Pfam AP2 domain 15 65 IPR001471 GO:0003700|GO:0006355
Tsu01g02936 132 ProSiteProfiles AP2/ERF domain profile. 15 73 IPR001471 GO:0003700|GO:0006355
Tsu01g02936 132 SUPERFAMILY DNA-binding domain 15 74 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02936 Tsu-Chr1 35737224 35737622 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02936 15 132 AP2-EREBP Transcription Factor Family AT3G23230 62.295 1.25e-42 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Tsu01g02936 AP2 4.6e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02936 - - gmx:100775830 125.946