Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02926 ATGGAAAGAAACACAGCATGGAGTGTAATAGAAGAAGATAGGTGGAGGAAAGGACCTTGGACTTCTGAGGAAGACAAATTGCTCATTGAATATGTCAAGCTTCATGGTGAAGGAAGATGGAACTCTGTTGCTAGGCTTACAGGATTGAGAAGAAATGGGAAAAGTTGTAGATTGAGATGGGTGAACTACCTAAGACCAGACCTCAAGAAGGGTCATATAACCCCACAAGAAGAAACCATAATCCTAGAGCTTCATGCTAGGTGGGGAAATAGgTGGTCAACAATTGCAAGAAGTTTACCGGGAAGAACAGACAATGAAATAAAGAACTATTGGAGGACTCATTTTAAGAAAAAGGCGAAAAGCCCTTCTGATGCTGCTGAAAAGGCGAAAAAACGTTTTTTCAAGAGGCAGCAACAGCAACAGTTGATGCCTCAGCAGCAGCATCAGATTCAACAGCAACAATTTCAATACAATTTGGACATGAAAGGGATCATAGACTTGTTGCTTGATGAAAATGAGTACTATAATGTGCCTTCTACATCTCAAGAGACACAAGAAATGGTTTCAATGTACACCGATACACCAGAACAACAGGGCTACTTTTACTCTATGCTCAATGATAATAATGGTAATGTCTATGCACAAGAGTCTTCAAATGAAGAAATTTTGTGGGATGGACTTTGGAACTTGGATGATGTTCTTGGAAATTCAATGCAGCTAATGCTACAAGCAAAACCAGCCAATGTGCACAATTTAGTTACTCCCTTTTGTTAA 774 0.3953 MERNTAWSVIEEDRWRKGPWTSEEDKLLIEYVKLHGEGRWNSVARLTGLRRNGKSCRLRWVNYLRPDLKKGHITPQEETIILELHARWGNRWSTIARSLPGRTDNEIKNYWRTHFKKKAKSPSDAAEKAKKRFFKRQQQQQLMPQQQHQIQQQQFQYNLDMKGIIDLLLDENEYYNVPSTSQETQEMVSMYTDTPEQQGYFYSMLNDNNGNVYAQESSNEEILWDGLWNLDDVLGNSMQLMLQAKPANVHNLVTPFC 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02926 257 Gene3D - 74 157 - -
Tsu01g02926 257 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Tsu01g02926 257 PANTHER MYB TRANSCRIPTION FACTOR 2 245 - -
Tsu01g02926 257 ProSiteProfiles Myb-like domain profile. 12 64 IPR001005 -
Tsu01g02926 257 CDD SANT 19 64 IPR001005 -
Tsu01g02926 257 Gene3D - 17 69 - -
Tsu01g02926 257 SMART sant 16 66 IPR001005 -
Tsu01g02926 257 SMART sant 69 117 IPR001005 -
Tsu01g02926 257 Pfam Myb-like DNA-binding domain 71 114 IPR001005 -
Tsu01g02926 257 Pfam Myb-like DNA-binding domain 17 64 IPR001005 -
Tsu01g02926 257 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 16 64 IPR017930 -
Tsu01g02926 257 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 2 245 IPR044676 GO:0003700|GO:0006355|GO:0043565
Tsu01g02926 257 CDD SANT 74 115 IPR001005 -
Tsu01g02926 257 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 119 IPR017930 -
Tsu01g02926 257 SUPERFAMILY Homeodomain-like 14 111 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02926 Tsu-Chr1 35669093 35670404 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02926 12 257 MYB Transcription Factor Family AT3G24310 55.686 2.87e-83 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu01g02926 Myb_DNA-binding 7.8e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02926 K09422 - gmx:100782089 354.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g02926 01 35669093 35670404 Tsu01g02926 01 35669093 35670404 ECH