Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02914 ATGGAACAGGAAGAGCACGAAGTTTACGGTGCAGACATTCCTGATGAAGAGGTTGACATGGACGCTGACATAGATGCTGAACAACAAGAAGGAGATGAAGAACTCGCTTCCAATCAAACCACCAAGGAATTGGAAGACATGAAGAAAAGGCTGAAAGAGATCGAGGAAGAAGCTAGCGCCCTTCGCGAAATGCAAGCTAAGGTTGAGAAAGAGATGGGCGCTGTTCAAGaTCCTGCTGGGTCTTCTGCAACTCAAGCTGAAAAGGAGGAAGTTGATGCTCGATCGATCTATGTCGGTAATGTTGACTACGCCTGTACACCTGAAGAAGTCCAACAGCATTTTCAGTCCTGTGGTACTGTGAACAGAGTGACAATACTGACAGACAAATTTGGGCAACCGAAAGGATTTGCTTACGTAGAATTTGTTGAGGTAGATGCTGTTCAGAATGCTCTCATTTTAAATGAAACTGAATTGCATGGCCGACAGCTAAAGGTGTCTGCGAAACGTACAAATGTGCCTGGATTGAAGCAGTATTTTGGAAGAAGACCTGCTGGTTTCCGAGCAAGGAGGCCTTTCATGCCTCCACCATTCTATCCACCATATGCTTACGGAAGGGTTCCGAGATATAGAAGACCAACCCGATACCGGCCATACTAG 657 0.4597 MEQEEHEVYGADIPDEEVDMDADIDAEQQEGDEELASNQTTKELEDMKKRLKEIEEEASALREMQAKVEKEMGAVQDPAGSSATQAEKEEVDARSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVDAVQNALILNETELHGRQLKVSAKRTNVPGLKQYFGRRPAGFRARRPFMPPPFYPPYAYGRVPRYRRPTRYRPY 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02914 218 CDD RRM_II_PABPs 95 166 - -
Tsu01g02914 218 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 94 170 IPR000504 GO:0003723
Tsu01g02914 218 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 96 164 IPR000504 GO:0003723
Tsu01g02914 218 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 3 217 - -
Tsu01g02914 218 Coils Coil 37 71 - -
Tsu01g02914 218 MobiDBLite consensus disorder prediction 1 32 - -
Tsu01g02914 218 SMART rrm1_1 95 166 IPR000504 GO:0003723
Tsu01g02914 218 PANTHER POLYADENYLATE-BINDING PROTEIN 1-LIKE 3 217 - -
Tsu01g02914 218 MobiDBLite consensus disorder prediction 36 50 - -
Tsu01g02914 218 Gene3D - 12 174 IPR012677 -
Tsu01g02914 218 SUPERFAMILY RNA-binding domain, RBD 84 191 IPR035979 GO:0003676
Tsu01g02914 218 MobiDBLite consensus disorder prediction 1 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02914 Tsu-Chr1 35476533 35481456 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02914 95 166 Eukaryotic Initiation Factors Gene Family AT2G36660 36.842 7.03e-10 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02914 K14396 - gmx:100527545 335.109