Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02898 ATGGCAGATGCAGAGAGTCCAGCTAATGGTGGTAGCCACGAAAGTGGAGGCGAACAAAGTCCACATGGTGGTTCTTCTGCTGCTCGTGAACAAGATCGTTACTTGCCTATAGCTAATATAAGCAGAATCATGAAAAAAGCTTTACCTTCAAATGGGAAAATTGCTAAGGATGCTAAAGATACGATGCAAGAATGTGTTTCTGAATTCATCAGTTTTATTACCAGCGAGGCAAGTGAGAAATGccagaaagagaagagaaagaccATTAATGGTGATGATTTGTTATGGGCTATGGCTACTTTAGGATTTGAAGACTATATAGAACCACTTAAGGTGTACCTAGCAAGGTACAGGGAGTTAGAGGGTGACAGTAAAGGATCTGTTAGAAATGATGGATCTGGTAGACGAGATCAAGTTGGCCCTGGAGGTCAAAATGCTCAGTATGTTCATCAGGGTTCTTTGAACTATATTGATTCCCAGGTGCATCCACAACATCTGGTTATGCCTTCAATGCAAAACCATGAATAG 528 0.3958 MADAESPANGGSHESGGEQSPHGGSSAAREQDRYLPIANISRIMKKALPSNGKIAKDAKDTMQECVSEFISFITSEASEKCQKEKRKTINGDDLLWAMATLGFEDYIEPLKVYLARYRELEGDSKGSVRNDGSGRRDQVGPGGQNAQYVHQGSLNYIDSQVHPQHLVMPSMQNHE 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02898 175 ProSitePatterns NF-YB/HAP3 subunit signature. 65 81 IPR003956 GO:0005634|GO:0006355|GO:0043565
Tsu01g02898 175 SUPERFAMILY Histone-fold 31 148 IPR009072 GO:0046982
Tsu01g02898 175 MobiDBLite consensus disorder prediction 1 31 - -
Tsu01g02898 175 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-2-RELATED 1 155 - -
Tsu01g02898 175 MobiDBLite consensus disorder prediction 123 147 - -
Tsu01g02898 175 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 34 98 IPR003958 -
Tsu01g02898 175 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 155 IPR027113 GO:0001228|GO:0006355|GO:0016602
Tsu01g02898 175 PRINTS CCAAT-binding transcription factor subunit A signature 100 118 - -
Tsu01g02898 175 PRINTS CCAAT-binding transcription factor subunit A signature 81 99 - -
Tsu01g02898 175 PRINTS CCAAT-binding transcription factor subunit A signature 62 80 - -
Tsu01g02898 175 MobiDBLite consensus disorder prediction 12 26 - -
Tsu01g02898 175 Gene3D Histone, subunit A 21 151 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02898 Tsu-Chr1 35162837 35166844 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02898 4 169 CCAAT-HAP3 Transcription Factor Family AT2G37060 67.857 5.02e-76 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Tsu01g02898 CBFD_NFYB_HMF 6.4e-29 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02898 K08065 - gmx:100815883 286.96