Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02874 atggaaggAGAAAGTAACAAAGACGACAACAGTTCAGAGCTAGCAATAGAATCATATGACAATGAAGAAACTAGCAGCCATGATGTCTCTGATGATCAtcatattcaaaatcaaaaatttGTTGGAACAAGTGGGTTTCAATGGAGTTCTTTACCAAAACTTGCTCAAAATAATTATGTTGAATATCTTTCTGAATCCTCAGCTAATTATCTTCCAAACACTACTACAACAGATGAGTATCAAACACTTGGTGGTAGTAGCAGCAGCTTCAATGATTCAGGAAAAGCTGTTTTTGGTTTTAAGCTGTTTGATTCTTCAAGTAATGATTTTGGTATTAAGAAGCGTGTTGGGTTTTGGAGAAATGATGAAAGAGAGGAAGTGATTAAAGCTGAAACTGGAAGTAGTCAAAATATTCTCTCTGCTGAGGCTCATGCAACATGGACACCTGATTCAGTTGGAGATAAGCAGAATGCTTCAAGATTTGATCCAATGGGAATAGTTTCTGCACCTTCTTTACTTCCAAGATCAGGAGGTAGCTCCTCAAAAcagaaaaatgagaaaatgcGTTACTCCGACCgtCAACGCAGGCAACGTATCGCTGACAACCTCAAAGCTTTACACGATTTGCTTCCAAATCCAGAAGTGGGTAGTCAAGCTTATATACTAGATGACATCATTGACTATGTTAACTACTTGCAAATTCAAGTGAAGCAACTTAGTGgaagtaaattgcaagctgaCTCAAATGCTGTACCACTAGTTTTTCATGAGGGTTATGGTCATTATATAAAGGAACAAATGCTGAATGAGCCACTTGAAGAGATAATGGGAAAACTACTTGAAGAAGATGCAGCAGCAGCAAGTCAGCTACTTGAAAACAAAGGTCTTATTCTGTTGCCTATTGCTCTTGCTGATGACTTGAACCAAGCTATACAATTGTGGAACCAAGCTAGTTAA 957 0.3574 MEGESNKDDNSSELAIESYDNEETSSHDVSDDHHIQNQKFVGTSGFQWSSLPKLAQNNYVEYLSESSANYLPNTTTTDEYQTLGGSSSSFNDSGKAVFGFKLFDSSSNDFGIKKRVGFWRNDEREEVIKAETGSSQNILSAEAHATWTPDSVGDKQNASRFDPMGIVSAPSLLPRSGGSSSKQKNEKMRYSDRQRRQRIADNLKALHDLLPNPEVGSQAYILDDIIDYVNYLQIQVKQLSGSKLQADSNAVPLVFHEGYGHYIKEQMLNEPLEEIMGKLLEEDAAAASQLLENKGLILLPIALADDLNQAIQLWNQAS 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02874 318 MobiDBLite consensus disorder prediction 166 194 - -
Tsu01g02874 318 MobiDBLite consensus disorder prediction 1 35 - -
Tsu01g02874 318 PANTHER TRANSCRIPTION FACTOR BHLH66-LIKE ISOFORM X1 22 304 - -
Tsu01g02874 318 MobiDBLite consensus disorder prediction 1 36 - -
Tsu01g02874 318 SMART finulus 189 238 IPR011598 GO:0046983
Tsu01g02874 318 CDD bHLH_AtbHLH_like 191 240 IPR045239 -
Tsu01g02874 318 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 22 304 - -
Tsu01g02874 318 Pfam Helix-loop-helix DNA-binding domain 192 233 IPR011598 GO:0046983
Tsu01g02874 318 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 183 232 IPR011598 GO:0046983
Tsu01g02874 318 Gene3D - 180 251 IPR036638 GO:0046983
Tsu01g02874 318 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 180 246 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02874 Tsu-Chr1 34602652 34605921 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02874 183 310 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G30980 38.462 6.54e-21 90.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu01g02874 HLH 7.7e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02874 - - mtr:MTR_1g072530 425.246
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g02874 01 34602652 34605921 Tsu01g02874 01 34602652 34605921 ECH