Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02866 ATGAACAATATGGCTTCTCAAACTCCAAAGCTTCAAAATATGTTGCAGGCTGCAGTGCAATCTGTTCAATGGACTTATAGTCTCTTCTGGCAACTTTGTCCACAACAAATGATTCTGGTATGGGGTGATGGATATTACAATGGAGCAATTAAGACAAGAAAGACAGTGCAACCAATGGAGGTaagtgcggaggaagcatctcTACAAAGAAGCCAACAACTAAGAGAGTTGTATGAATCATTATCGGCCGGAGAGACAAACCCACCAACTCGCCGGCCTTGTGCTTCCTTGTCACCAGAGGATCTAACAGAATCTGAGTGGTTCTATTTGATGtgtgtctctttctcttttCCTCCTGGTGTCGGGTTGCCGGGAAAGGCATACACGAGAAGGCAGCATGTGTGGCTTACGGGTGCAAACGAAGTGGACAGCAAAACATTTTCAAGAGCTATTTTAGCCAAGAGTGCTAACATACAGactGTGGTATGCATTCCTGTATTAGATGGTGTTGTTGAGTTCGGCACAGTAGAAAAgGTTCAAGAAGATCTTAATTTCATCAAACACGTGAAGAGTTTCTTCGTAGATAACCAATCTATGCCGCCAAAGCCGGCATTATCGGAACACTCTACCTCTAACCCAACCTCCTCAACTGATCACATTCCCATCATCATGTACACCGTGGTAGACCCACCCATGATAAATCCCAACCAAGACGATATGGATGAAGATggggaagaggaagaagatgatgatgaagaagaagaagaagatgaagttgaatcTGGATCTGATGATGAAATTGGAGTTCGTAATCGACGTGCAACCACTATGACAACAGTTGTGGAGCCGAGTGAGATGCAGATTGAAATGCCAGACGATATTCGAGTTGGATCACCAAACGATGGGTCAAATAATTTGGATTCTGATTTCCATTTGTTAGCAGTGAGTAACCAAGGGAACATGTTAAGTCAAGTTGACTCTTACAAAACTGTGTCGACACGGAGGTGGGGTCCAATTGAAGAGCCGCTACAAGTTCAACCGCCATCTTCAGTGCTTCATCATCCATTAGAAGACTTAACACAAGAAGACACACACTACTCTCAAACAGTATCAACCGTTCTCCAAAACCAATCAACAAGATGGATCAATTCACCTTCCATCAACTTCACTTACTCCACCCAATCATCTTTCACCAACTGGACCAACTATAACTTCCACACACCGCCGCCGGACACCACAACCTCACAATGGCTCCTCAAATACATCCTCTTCACAGTCCCATACCTCCACACCAAAAACCACGACGAAACCTCCCCCCAAACCAATGACAATGCCGGAGGACTCAACAATGATCCCTCCACCCGGCTACGCGGTAAAGGAGGACCGCAAGACGAGCTCAGCGCTAACCATGTTCTCGCTGAGCGAAGACGAAGAGAGAAACTTAACGAGAGGTTCATTATTTTAAGATCATTGGTTCCATTCGTTACGAAGATGGATAAAGCTTCTATATTAGGTGACACAATCGAGTACTTAAAACAGCTTCGGAGAAAGATTCAGGATCTCGAGACGCGTAACCGTCAGATTGAATCTGAGAGGAGTGGCTTAACCGTTTTGGTTGGTCCCACTGAGAAGAAAAAAGTGAGGATTATGGAAGGGTGTGTTGGGGATAATAGAGCGAAAGCGGTTGAGGTTGTTGAGACGGAGGTTGTTGCGTCGGTTCAAGTTTCGATTATTGAGAGTGATGCTTTGTTGGAGATAGAGTGCTTACATAGAGAAGGGTTGTTGTTGGATGTTATGCAGATGTTGAGGGAGTTGAGGATTGAGGTTATCGGGGTTCAGTCTTCGCTTAACAATGGTGTTTTTATTGCAGAATTGAGAGCTAAGGTGAAGGAAAATGGAGGAAATGGGAAGAAAGTTAGTATTGTGGAAGTTAAGAGAGCACTTAACCAACTTATACCTCATAacatttag 1971 0.4201 MNNMASQTPKLQNMLQAAVQSVQWTYSLFWQLCPQQMILVWGDGYYNGAIKTRKTVQPMEVSAEEASLQRSQQLRELYESLSAGETNPPTRRPCASLSPEDLTESEWFYLMCVSFSFPPGVGLPGKAYTRRQHVWLTGANEVDSKTFSRAILAKSANIQTVVCIPVLDGVVEFGTVEKVQEDLNFIKHVKSFFVDNQSMPPKPALSEHSTSNPTSSTDHIPIIMYTVVDPPMINPNQDDMDEDGEEEEDDDEEEEEDEVESGSDDEIGVRNRRATTMTTVVEPSEMQIEMPDDIRVGSPNDGSNNLDSDFHLLAVSNQGNMLSQVDSYKTVSTRRWGPIEEPLQVQPPSSVLHHPLEDLTQEDTHYSQTVSTVLQNQSTRWINSPSINFTYSTQSSFTNWTNYNFHTPPPDTTTSQWLLKYILFTVPYLHTKNHDETSPQTNDNAGGLNNDPSTRLRGKGGPQDELSANHVLAERRRREKLNERFIILRSLVPFVTKMDKASILGDTIEYLKQLRRKIQDLETRNRQIESERSGLTVLVGPTEKKKVRIMEGCVGDNRAKAVEVVETEVVASVQVSIIESDALLEIECLHREGLLLDVMQMLRELRIEVIGVQSSLNNGVFIAELRAKVKENGGNGKKVSIVEVKRALNQLIPHNI 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02866 656 MobiDBLite consensus disorder prediction 433 451 - -
Tsu01g02866 656 PANTHER TRANSCRIPTION FACTOR TT8 10 654 - -
Tsu01g02866 656 MobiDBLite consensus disorder prediction 202 221 - -
Tsu01g02866 656 Gene3D - 466 535 IPR036638 GO:0046983
Tsu01g02866 656 Coils Coil 504 531 - -
Tsu01g02866 656 Pfam Helix-loop-helix DNA-binding domain 468 515 IPR011598 GO:0046983
Tsu01g02866 656 MobiDBLite consensus disorder prediction 236 263 - -
Tsu01g02866 656 MobiDBLite consensus disorder prediction 433 467 - -
Tsu01g02866 656 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 11 193 IPR025610 -
Tsu01g02866 656 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 465 514 IPR011598 GO:0046983
Tsu01g02866 656 PANTHER TRANSCRIPTION FACTOR TT8 10 654 - -
Tsu01g02866 656 SMART finulus 471 520 IPR011598 GO:0046983
Tsu01g02866 656 MobiDBLite consensus disorder prediction 200 273 - -
Tsu01g02866 656 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 467 536 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02866 Tsu-Chr1 34486794 34499837 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02866 5 210 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09820 72.330 2.60e-106 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu01g02866 bHLH-MYC_N 4.6e-54 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02866 - - cam:101506726 871.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g02866 01 34486794 34499837 Tsu01g02866 01 34486794 34499837 ECH
Tsu07g04033 07 46352561 46354293 Tsu01g02866 01 34486794 34499837 PCT