Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02857 ATGGATTTTGTTGATTCTTCATTTTTCCAATTCCAATACCAAAACCTTAAcacttcattttcaaattcttcttctttttcagaATCCTTTTCATGGgatgatttctttttcttcaatgaaGACAACACCAACAGTAATAATAACGATAAcgataacaataacaataacaacactTTCCCCTTGAACTTCACTGATCAAAACACACAAGAAGTTTCATTATCCAATTCCAATTCCAACACTTCAAACTCTCAAATAAGTTCAGAATCACAAGAAGTTTCATCCAATTCTTCAAATCAAGTTATAGAAACACAATCATCATCGTCACCTAAGAGGCCATACAGAGGAGTTAGGAGAAGACCATGGGGAAAATTTGCGGCGGAGATAAGAGACTCAACTAGAAATGGTGTTAGAGTTTGGATTGGAACATTTGATACTGCTGAAGCAGCTGCTTTAGCTTATGATCAAGCAGCTTTAACAACAAGAGGTTCAATGGCAGTGTTGAATTTTCCTGAACAAGTTGTGAGGGAATCATTGAAAGATATGGTGATTAATAAGTCTTGGGAAAATGATGGTTCTTCACCTGTTTTAGCACTTAAGAGGAAACACactttgaaaagaaaatctAAGGCAAGTAATTGCAAAAAGACCAAAAGGGTAGAAAGGGAAATGGAGAATAATGTTCTTGTTTCAAAAAATGTGTTGGTTTTGGAAGATTTGGGTTCTGAATATTTAGACCAACTTCTTAGTTTGAGTACTTCTTCTCAAGTCTTTTGTTAG 777 0.3127 MDFVDSSFFQFQYQNLNTSFSNSSSFSESFSWDDFFFFNEDNTNSNNNDNDNNNNNNTFPLNFTDQNTQEVSLSNSNSNTSNSQISSESQEVSSNSSNQVIETQSSSSPKRPYRGVRRRPWGKFAAEIRDSTRNGVRVWIGTFDTAEAAALAYDQAALTTRGSMAVLNFPEQVVRESLKDMVINKSWENDGSSPVLALKRKHTLKRKSKASNCKKTKRVEREMENNVLVSKNVLVLEDLGSEYLDQLLSLSTSSQVFC 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02857 258 Pfam AP2 domain 113 162 IPR001471 GO:0003700|GO:0006355
Tsu01g02857 258 PANTHER DNA-BINDING DOMAIN 11 251 IPR044808 GO:0003700|GO:0009873
Tsu01g02857 258 MobiDBLite consensus disorder prediction 43 111 - -
Tsu01g02857 258 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 11 251 - -
Tsu01g02857 258 Gene3D AP2/ERF domain 112 172 IPR036955 GO:0003700|GO:0006355
Tsu01g02857 258 PRINTS Ethylene responsive element binding protein signature 113 124 IPR001471 GO:0003700|GO:0006355
Tsu01g02857 258 PRINTS Ethylene responsive element binding protein signature 136 152 IPR001471 GO:0003700|GO:0006355
Tsu01g02857 258 ProSiteProfiles AP2/ERF domain profile. 112 170 IPR001471 GO:0003700|GO:0006355
Tsu01g02857 258 SMART rav1_2 112 176 IPR001471 GO:0003700|GO:0006355
Tsu01g02857 258 CDD AP2 113 172 IPR001471 GO:0003700|GO:0006355
Tsu01g02857 258 MobiDBLite consensus disorder prediction 43 118 - -
Tsu01g02857 258 SUPERFAMILY DNA-binding domain 113 171 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02857 Tsu-Chr1 34396397 34397403 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02857 61 254 AP2-EREBP Transcription Factor Family AT3G23240 48.205 9.63e-52 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Tsu01g02857 AP2 1.1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02857 K14516 - gmx:100784784 208.764