Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02850 ATGAGAGAAGGGTTGAGATCTCGGACTCGGTCCGGGAAGGGTTCTGGTGAAGGAGAAGTTGTTCACAAGAAAAGGGTTCGTGTGAAGAATGAGGTTTTGGTTTCGGGTGATGAGGGTCTGGTGGAACGTACGCAGGCCGTAGTTGAGGCTTTATTTGGTGATGAGGGTTTAGTGGAACCTACCTCATTGATTGAGAAGGGTGAAACTGAGGCATTAGTTTCAGGTGATGAGGGTTTAGTGGAGCCTACTTCATTGATTGAGAAGAAGGGTGAAACTGAGGCTTTAGTTTCGGGTGATGAGGGTTTAGCGGAGCCTGCCTTATCGATTGAGAACAAGGGTGAAGTTGAGGCTTTATTTTCGGGTGATGAAGGTTTAGTGGAACCTACCTCATCAATTGAGAAGAAGGATGAAACTGGGGATTTAGTTTCGGGTGATGAGAGTTTAGTGGAACCTACCTCATCTATTGAGAAGAAGGATGAAGTTGAGGCTATAGTTATGGGTGATGAGGTTTTAGTGGAACCTACCTCATCGATTGAGAAGAAGGGTGATGTTGAATGTGCAGGCGTTGTTGAGTGTGCTGGTAAAGTTGAATGTGATGGGAAAaaagaatttgattttgatttaaacCTGAGTTTGAGTGTAAATGCGGACATAGATGAGAATGAGAACAGTAGCCCTAGGAGTTGTTTAAAAGATGGGCATAATATTGCAGAAGCTGATAAGAAGGAGAATGAAGCGTTGAGTGGGGGTCGAATATTGCGGTCCAGGTTAAAGAGGGGAGATGACAAAAGAGCTTATAATGGAGGGCATGATTGCATATTTCCTCAGAATAATGGAGAACATGGTCAGTTGGAGATGATACAAGTCAAGAAGGAGCTTGAAGAAGCTGTTGAGGTTTTAACTGATGGTGAAAAGAATGATAGGGTTAGGATGAAAATGGGAGGGAAgggcaagaagaaattgaaacgGAAGCGTGGGAGGCCTCccaaaacagaaataaaagagAAAGACCAATTAGATGATCAGCCACCACGTAAGCTTGGTAGGCCTCCAAAAACAGTGATAAAAGAGAAAGATCAATTAGATGATCAGCCACCGCGTAAGCTTAGGAGGCCTAGCAGAACAGAGTTAAAAGAGGATGTTCAGTCACCACGTAAGCTTGGGAGGCCTCGCAAAACAGAGGTAAAAGAGGATGTTCAGTCACCGCGTAAGCTTGGGAGGCCTCGCAAAACAGAGGTAAAAGAGGATGTTCAGTCACCGCGAAAGCGTGGAAGACCCCCCAAGACCGAGCAACAAAAACATCTCATGACCCTGGCACATAATAGTAAAGGAAAGGTGAGCAGTGAAGATGGTAAGAAAGTTGTAACTGTAACAGGTAGTGCAAGTGAAAGTGAAGTTGATGATACACGCTCAAGGAGATCTTCCggtaaaaagttaaaaaagaaaggATTTTCTCCtgtaaggaaaaataaattgcgAAAGGTTTTGAAAACTGAGAATGGGGGGATGACATCAAATACTGTGAGTTCACCTGTTGCTAAACAAAGTACAAGTCGTGAAGAAAAGAAGTTGGTGAGGGATAAAATAATGGAATGTCTCTCGGCTGCAGGATGGACCGTTGACCGTAGACCTAGAAACGGAAGAGATTATATTGATGCAGTATATGTTGCTCTGGACGGAAAAACACATTGGTCAATAACCTTGGCATACAAGAGgcttaaaaaacattatgaagcCGGGGACGGTGAAGGTAAGTTGTACAGACCAGGATTCAAATTTACACCAATATCGGAGGAAGATTTCAATTCATTAACTAGAGTAGTTACCAAGACCAGGATAGGAAGTAAAGTTAAACATGTGCCATTCGGAGGAAAGGGTGGAAAGAGAGTTGATGGAGTCAAtcgaaaagagaaaaaaataaaatcaggtTCTGGTGCAGGCAAGAGTAAGTTAGTgaaagggaaaaagaaaaggaaacgATCACTTCCTGTGGAGGGCAACACAAATGTTACATCACCTAACAGGGATCGTAAACGGCATAAAACACACAACAAGACTCGATGTGCTCTGTTGGTTCGTGATGCTACAGAGGAGGTAGATTCAGAAGTTAATGGATATGTGCCATACAGTGGAAAACGAACTATACTTGCTTGGATGATTGATCTGGGCACAATCCTCCAAAATGGGAAGGTCCATTATATGCAAGATAAGTTGGAAATTGCTTTTGAAGGTAAGATCACAGGAGATGGCATTCACTGTGGATGCTGTAATGAAATCATAACAATTTCAGACTTTGGAGCTCATGCAGGAAGCAAACAATCTGATCCtctgaaaaatatatatacggAGGAAGAATCTTCACTCCTACAATGCCTTCTAGATTCATGGAATAAACAAGATAAATCTGAACTTAAAAGTTTTCACTTCGTTGATGTTGCGGGTGAAGATCCAAATGATGATACATGTGGTGTATGCGGAGATGGTGGAGACCTGATCTGCTGTGATGGTTGCCCATCAACATTCCATAAAAGCTGCTTGGATATAAAAAAGTTCCCATCTGGTGACTGGCACTGCATTTATTGTTGTTGCAAATTTTGTGGGTTGGTTGATGGAAGTTCAAACCAAACTATCGCCAATGATGATTTTACTATGCCTGCACTGCTCACATGCCATTTATGTGAGGAAAAATTTCACATATCCTGTATTGTGGCAAATGGTGATAAGACCTATGATTCCAGAGTGGCAAATGGTGATAAGACCGATGATTCCAGGAATACATTTTGTGGAAACAAATGTCAAGAGTTATCTGAGAGACTTGAAATGCTTCTTGGGGTTAAAcatgaaattgaagatggatTTTCTTGGTCTTTTATTCGGCGGTCAGATGTCGGCCTTGATGTTTCTCTGACAAAATCTCAGACGGTAGAATGTAATTCTAAGCTGGCTGTTGCATTATCAATAATGAATGAGTGCTTCATGCCATACATTGATCATAGAAGCGGGACCAATCTTATCCGCAGTATTCTATATAATTGTGGGTCAAACTTCAAACGGCTAAATTATAGTGGGTTTATTACTGCAATTCTAGAGAGAGGTGATGAGATCATCTGTGTCGCATCTATCAGGATCCACGGGAACCAGCTTGCAGAGATGCCATTTATTGGAACCCGCTATATGTATAGGCGACAAGGAATGTGCCGTCGGCTTCTAAATGCCATTGAATGGGCACTTAGTTCTTTACATGTTGAGTTATTGGTCATACCAGCTATATCAGAACTCAGAGAAACCTGGACCTCCGTTTTTGGGTTTGAGCCACTTGAACAAACAAGCAAGGAAATAACAAAGAACATGAATCTGTTGGTATTTccacatgtagatatgttaCAGAAGAAGATATCAAAGCATGAAATTGCTAATGAAGATTTGATTGCTACTGAAGTTTCTAATCATAAGAATCTTACTACATTCAAAGTAGCAAAACGGGATGGGGAGGACTCATCTGTATCTGATTGTTGTCcgaaaattgaaaaaaccaTATCTATTGAATCTGGTTGTCGGCATCTTGAGAACTCATTGAATAATGCACCTGCTATTACTGGTTACACCATACAGAATAGTATATCTCCAAAAGATGTCACATGTCATGATGAGTCTGTTCATGAAAAATTGGGCGTGGACCAAAAAAGCACTGTAAATGCCAGTGAGGATGTAGCCAAATTTTGTTGCCAAGTAGAAGATAAGGGAAGACACTGTCTCAATACATCTTGTATTAACACTGAAGCTTCACAAGAACACAACGTTGGTGCTATGTTGGAGGTTACTGAAAATTGTTCCAATGAGGTCAAAGTAACAATTGAGGTTGGTTTAAATAACAACAGTGATGAAAAATCTGCACCCTCTGCTGAAGAAAATATTCCTATTGACTCACAAATTGGGTTTAGGACAAGGGAATCAAAATATTCTGCTGAAAGTAACCTTGATTCACCCAAGATTTCTGATAGTTTTGAACTGAGATTTAAGACTGACTGTGCTCAACCGGGCTGTATTGGATCAGAAGTAAATGCTGAATCTATCAATGGTTGTGGCTCTCATTCTAGACCAGATAGTGATAGTGCCACTGGTGCAGCAGGTCTCACAACCAACATCTTGATGCAGGTTGAATCAGAGAATACTACCAAAGATTTGCCTGCTAATTGTGAAAACAACTCTAGTGCTGTTAGTGCACCAAATGCTGATGAAGCAGAACTATATTATTCCAAAACAATTGATCTCCAGACAAACAAAAATCCTGGAGGTTGCCAATCTTCAGCTATTTGTGTGAAAATTGTAGATGGTGTCAATGAGACGAATAAAGCATCCAGGGAAGCTGATGCCGATTTTTTCCCCACTGATAAACCTGATTCCCATTCTAGACCCAATGGTCATAGAGCCTCTGGCGAAGCAGGTCTCACAACTAACACTTCGATGCATCTTGAATCTCAGAATATTACCAAAGATTTGCCTGTTAATTGTGAAAATAATTCTAGTGTTGTTGGTGCGCCAACAATTGATCTCCAGACAAACAAAAATCCCGGAGATTGCCAATCCATATCTTCAGGTGTTTGTGAGAAAATTGCAGATGGTGTCCATGAGAGGAATAAAGCATCCAATGCAGCTGATGTTCTTCCTGTTGATATTGAAGTATTTCCCAATAATAAGCCTGGGATAAAGAAGTCTTCAGAGTTAGCAGAGCTGGATTTGCAGGTTGATCAAACTGAACCGAGTAACGCTAACATTGCTTTGGGTGCGGCTTTGCACTGTATATCTACCGACAGTACTTCACATGGTAGTACTGAAGGGACAGTGCTTGCAAACCAAGGTTGCTGA 4866 0.3956 MREGLRSRTRSGKGSGEGEVVHKKRVRVKNEVLVSGDEGLVERTQAVVEALFGDEGLVEPTSLIEKGETEALVSGDEGLVEPTSLIEKKGETEALVSGDEGLAEPALSIENKGEVEALFSGDEGLVEPTSSIEKKDETGDLVSGDESLVEPTSSIEKKDEVEAIVMGDEVLVEPTSSIEKKGDVECAGVVECAGKVECDGKKEFDFDLNLSLSVNADIDENENSSPRSCLKDGHNIAEADKKENEALSGGRILRSRLKRGDDKRAYNGGHDCIFPQNNGEHGQLEMIQVKKELEEAVEVLTDGEKNDRVRMKMGGKGKKKLKRKRGRPPKTEIKEKDQLDDQPPRKLGRPPKTVIKEKDQLDDQPPRKLRRPSRTELKEDVQSPRKLGRPRKTEVKEDVQSPRKLGRPRKTEVKEDVQSPRKRGRPPKTEQQKHLMTLAHNSKGKVSSEDGKKVVTVTGSASESEVDDTRSRRSSGKKLKKKGFSPVRKNKLRKVLKTENGGMTSNTVSSPVAKQSTSREEKKLVRDKIMECLSAAGWTVDRRPRNGRDYIDAVYVALDGKTHWSITLAYKRLKKHYEAGDGEGKLYRPGFKFTPISEEDFNSLTRVVTKTRIGSKVKHVPFGGKGGKRVDGVNRKEKKIKSGSGAGKSKLVKGKKKRKRSLPVEGNTNVTSPNRDRKRHKTHNKTRCALLVRDATEEVDSEVNGYVPYSGKRTILAWMIDLGTILQNGKVHYMQDKLEIAFEGKITGDGIHCGCCNEIITISDFGAHAGSKQSDPLKNIYTEEESSLLQCLLDSWNKQDKSELKSFHFVDVAGEDPNDDTCGVCGDGGDLICCDGCPSTFHKSCLDIKKFPSGDWHCIYCCCKFCGLVDGSSNQTIANDDFTMPALLTCHLCEEKFHISCIVANGDKTYDSRVANGDKTDDSRNTFCGNKCQELSERLEMLLGVKHEIEDGFSWSFIRRSDVGLDVSLTKSQTVECNSKLAVALSIMNECFMPYIDHRSGTNLIRSILYNCGSNFKRLNYSGFITAILERGDEIICVASIRIHGNQLAEMPFIGTRYMYRRQGMCRRLLNAIEWALSSLHVELLVIPAISELRETWTSVFGFEPLEQTSKEITKNMNLLVFPHVDMLQKKISKHEIANEDLIATEVSNHKNLTTFKVAKRDGEDSSVSDCCPKIEKTISIESGCRHLENSLNNAPAITGYTIQNSISPKDVTCHDESVHEKLGVDQKSTVNASEDVAKFCCQVEDKGRHCLNTSCINTEASQEHNVGAMLEVTENCSNEVKVTIEVGLNNNSDEKSAPSAEENIPIDSQIGFRTRESKYSAESNLDSPKISDSFELRFKTDCAQPGCIGSEVNAESINGCGSHSRPDSDSATGAAGLTTNILMQVESENTTKDLPANCENNSSAVSAPNADEAELYYSKTIDLQTNKNPGGCQSSAICVKIVDGVNETNKASREADADFFPTDKPDSHSRPNGHRASGEAGLTTNTSMHLESQNITKDLPVNCENNSSVVGAPTIDLQTNKNPGDCQSISSGVCEKIADGVHERNKASNAADVLPVDIEVFPNNKPGIKKSSELAELDLQVDQTEPSNANIALGAALHCISTDSTSHGSTEGTVLANQGC 1621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02850 1621 MobiDBLite consensus disorder prediction 619 684 - -
Tsu01g02850 1621 CDD PHD1_AIRE 822 861 - -
Tsu01g02850 1621 MobiDBLite consensus disorder prediction 128 142 - -
Tsu01g02850 1621 MobiDBLite consensus disorder prediction 120 154 - -
Tsu01g02850 1621 MobiDBLite consensus disorder prediction 1453 1482 - -
Tsu01g02850 1621 SMART AT_hook_2 402 414 IPR017956 GO:0003677
Tsu01g02850 1621 SMART AT_hook_2 322 334 IPR017956 GO:0003677
Tsu01g02850 1621 SMART AT_hook_2 344 356 IPR017956 GO:0003677
Tsu01g02850 1621 SMART AT_hook_2 420 432 IPR017956 GO:0003677
Tsu01g02850 1621 SMART AT_hook_2 384 396 IPR017956 GO:0003677
Tsu01g02850 1621 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 23 1503 - -
Tsu01g02850 1621 Coils Coil 1125 1145 - -
Tsu01g02850 1621 MobiDBLite consensus disorder prediction 1 22 - -
Tsu01g02850 1621 MobiDBLite consensus disorder prediction 328 430 - -
Tsu01g02850 1621 SUPERFAMILY FYVE/PHD zinc finger 810 863 IPR011011 -
Tsu01g02850 1621 Pfam Tify domain binding domain 744 793 IPR032308 -
Tsu01g02850 1621 MobiDBLite consensus disorder prediction 629 644 - -
Tsu01g02850 1621 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 811 883 IPR013083 -
Tsu01g02850 1621 PRINTS AT-hook-like domain signature 418 428 IPR017956 GO:0003677
Tsu01g02850 1621 PRINTS AT-hook-like domain signature 322 332 IPR017956 GO:0003677
Tsu01g02850 1621 PRINTS AT-hook-like domain signature 342 353 IPR017956 GO:0003677
Tsu01g02850 1621 Pfam AT hook motif 384 395 IPR017956 GO:0003677
Tsu01g02850 1621 Pfam AT hook motif 322 331 IPR017956 GO:0003677
Tsu01g02850 1621 Pfam AT hook motif 344 353 IPR017956 GO:0003677
Tsu01g02850 1621 Pfam AT hook motif 402 413 IPR017956 GO:0003677
Tsu01g02850 1621 Pfam AT hook motif 420 430 IPR017956 GO:0003677
Tsu01g02850 1621 ProSiteProfiles Zinc finger PHD-type profile. 819 864 IPR019787 -
Tsu01g02850 1621 MobiDBLite consensus disorder prediction 312 327 - -
Tsu01g02850 1621 MobiDBLite consensus disorder prediction 259 278 - -
Tsu01g02850 1621 PANTHER PHD FINGER PROTEIN 12 23 1503 IPR042163 GO:0003714|GO:0045892
Tsu01g02850 1621 SMART PHD_3 821 862 IPR001965 -
Tsu01g02850 1621 SMART PHD_3 863 933 IPR001965 -
Tsu01g02850 1621 MobiDBLite consensus disorder prediction 1453 1474 - -
Tsu01g02850 1621 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 972 1132 IPR000182 GO:0016407
Tsu01g02850 1621 MobiDBLite consensus disorder prediction 299 521 - -
Tsu01g02850 1621 MobiDBLite consensus disorder prediction 499 515 - -
Tsu01g02850 1621 MobiDBLite consensus disorder prediction 475 491 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02850 Tsu-Chr1 34178892 34190152 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02850 379 1139 PHD Transcription Factor Family AT5G36670 41.646 0.0 598
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02850 - - cam:101502634 1802.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g02850 01 34178892 34190152 Tsu01g02850 01 34178892 34190152 ECH
Tsu07g03593 07 42086181 42093406 Tsu01g02850 01 34178892 34190152 PCT