Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02808 ATGGGTAACGTAGACTATGATTACCCTTGTTCGGGAATGAACAACGTTGATGAGAATCGTGTGGAAATTCCACCACCTCAACCATTTTTGAAATCTTTGAAGTATTCAATGAAAGAAACTTTCTTTCCAGATGATCCTTTGAGGAGGTTTAAGAATCAACCAGCTTCCAAAAAGATTGTGCTTGGTCTTCAATATTTCTTCCCTATATTTGAATGGGCACCAAGATACACTTTTCAGTTCTTGAAATCTGATCTAATAGCTGGCATCACTATTGCTAGTTTGGCTATTCCTCAAGGCATTAGCTATGCCAAACTTGCCAACCTCCCCCCAATTCTTGGACTATATTCGAGCTTTATACCACCTTTGATTTATGCTATGATGGGTAGTTCAAGGGATTTGGCAGTTGGAACAGTGGCAGTTGGATCTCTTTTGATGGGTTCCATGTTAGGCAATGAGGTTAATCCCAATCAAAACCCAAAGCTTTTTCTCCACCTTGCTTTTACAGCTACATTCTTTGCTGGGGTTTTTCAAGCTTCATTGGGTCTCTTTAGGTTAGGGTTTATTGTGGATTTCCTATCACATGCAACTATAGTAGGATTCATGGGAGGAGCAGCCACGGTGGTTTGTCTGCAGCAGCTGAAATCAATTCTAGGACTTGAACATTTCACCCATGCTGCTGATCTTGTATCAGTCATGCGCTCTGTTTTTACCCAAACTCATCAGTGGAGGTGGGAAAGTGCAGTGTTGGGATTTGGCttcattttctttctccttGTCACAAGATACTTCAGCAAAAAACAACCCAAGTTCTTTTGGGTGTCAGCAATGACGCCGTTGGCATCCGTTATACTAGGAAGTGTACTGGTTTATTTTACTCACGCGGAGAATCATGGCGTTCAAGTGatagGAGAATTGAAAAAAGGTCTAAATCCACCATCACTCACAGAATTGGTATTTGTGTCACCATATATGACCACAGCTATCAAAACTGGCATTATTGTTGGCATTATTGCTCTTGCAGAAGGAATAGCTGTAGGAAGAAGCTTTGCAATgtataaaaattacaatattgatGGCAACAAAGAGATGATAGCTATTGGAACCATGAACATAGTTGGTTCTTTCACCTCTTGCTACCTCACAACAGGGCCATTTTCACGTTCGGCTGTGAACTACAATGCTGGATGCAAGACAGCAGTATCCAACATTGTGATGTCAATTGCAGTCATGTTGACACTGTTATTTTTGACACCTTTGTTCTATTACACTCCTCTGGTGGTACTATCAGCCATAATTGTATCCGCAATGCTTGGACTTATAGATTATGAAGCAGCCATCCATCTGTGGAAGGTTGATAAATTCGATTTTGTTGTCTGCATTAGCGCATATATTGGTGTTGTTTTTGGCAGTGTTGAAATTGGCTTAGTCATAGCAGTTGCTATATCAGTACTTCGGTTACTGCTGTTTGTTGCAAGACCAAGGACATTTGTTTTGGGAAACATTCCAAACTCTATAATATACAGAAACATTGAGCATTATCCGAATGCAAATCGTGTTTCCGGAATCCTAATTCTAAAGATTGATGCACCAATTTACTTTGCCAATGCAAGCTATTTAAGAGAAAGgatCTCAAGGTGGATTGATGAAGAGGAAGACAGAATTAAATCTACAGGGGAAACAAGTTTGAAGTATATTATAATGGATATGAGTGCTGTTGGGAATATTGATACAAGTGGAATAAGTATGCTTGAAGAGATTAAGAAGATTGCTGAAAGAAGAGAGCAACAACTTGTTTTGGTGAATCCTGGAAGTGAGGTGATGAAGAAACTAAACAAATCCAACTTCCAAAAGGACACAGGTGGAAATTGGATCTATCTGACAGTGCAAGAGGCTGTTAGAGCATGTAACTTTGTGCTCCATTCAAGCAAAACAAATCCCAAAAGAGATGAATCAGAGGGTTGGAACAATGTCTGA 1974 0.3921 MGNVDYDYPCSGMNNVDENRVEIPPPQPFLKSLKYSMKETFFPDDPLRRFKNQPASKKIVLGLQYFFPIFEWAPRYTFQFLKSDLIAGITIASLAIPQGISYAKLANLPPILGLYSSFIPPLIYAMMGSSRDLAVGTVAVGSLLMGSMLGNEVNPNQNPKLFLHLAFTATFFAGVFQASLGLFRLGFIVDFLSHATIVGFMGGAATVVCLQQLKSILGLEHFTHAADLVSVMRSVFTQTHQWRWESAVLGFGFIFFLLVTRYFSKKQPKFFWVSAMTPLASVILGSVLVYFTHAENHGVQVIGELKKGLNPPSLTELVFVSPYMTTAIKTGIIVGIIALAEGIAVGRSFAMYKNYNIDGNKEMIAIGTMNIVGSFTSCYLTTGPFSRSAVNYNAGCKTAVSNIVMSIAVMLTLLFLTPLFYYTPLVVLSAIIVSAMLGLIDYEAAIHLWKVDKFDFVVCISAYIGVVFGSVEIGLVIAVAISVLRLLLFVARPRTFVLGNIPNSIIYRNIEHYPNANRVSGILILKIDAPIYFANASYLRERISRWIDEEEDRIKSTGETSLKYIIMDMSAVGNIDTSGISMLEEIKKIAERREQQLVLVNPGSEVMKKLNKSNFQKDTGGNWIYLTVQEAVRACNFVLHSSKTNPKRDESEGWNNV 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02808 657 ProSitePatterns SLC26A transporters signature. 110 131 IPR018045 GO:0008271|GO:0008272
Tsu01g02808 657 SUPERFAMILY SpoIIaa-like 515 635 IPR036513 -
Tsu01g02808 657 PANTHER SULFATE TRANSPORTER 2 655 IPR001902 GO:0015301|GO:0016020|GO:0055085
Tsu01g02808 657 CDD STAS_SulP_like_sulfate_transporter 513 628 - -
Tsu01g02808 657 Pfam Sulfate permease family 81 461 IPR011547 GO:0016021
Tsu01g02808 657 ProSiteProfiles STAS domain profile. 512 635 IPR002645 -
Tsu01g02808 657 Pfam STAS domain 513 631 IPR002645 -
Tsu01g02808 657 PANTHER SLC26A/SULP TRANSPORTER-RELATED 2 655 - -
Tsu01g02808 657 TIGRFAM sulP: sulfate permease 68 631 IPR001902 GO:0015301|GO:0016020|GO:0055085
Tsu01g02808 657 Gene3D STAS domain 492 637 IPR036513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02808 Tsu-Chr1 33503238 33512023 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02808 19 657 Inorganic Solute Cotransporters AT4G02700 70.312 0.0 928
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02808 K17471 - gmx:100810196 1136.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g02808 01 33503238 33512023 Tsu01g02808 01 33503238 33512023 ECH
Tsu07g03613 07 42278735 42286706 Tsu01g02808 01 33503238 33512023 PCT