Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02794 ATGATGATTAGAAACATTATTTCATCACAAAACCTATTCTTCGCGTTAGGGTTTCTTCTTTCAACCACAACAATCCCTTTCGCTTACAGCGAATCATCCACATGCTTAACCGTTTACAAAGACGGCGGCGCTCCGGCGGTGTTCAAATCCCCAAAATGCCCTCGCTGGAACCTCTTCGATTACAATTCTCATCCTCAATCAACTACGCGTTGCCAATCCGCAAAACTCCAAGGTCGAAGAAAATCACAAGAGGATCGCACTCTCTGTGTTCTCGATGTTCGCATTCCATTTCCCGGTGCCATGGGGATCAAGGATGTTGCGGTTGGGATTGTGGCGGTTTTCGATGGTCATAACGGTGCAGAAGCTAGTGAGATGGCGTCGAAACTTTTGATGGAGTATTTTGTTCTGCATACTTATTTTCTTCTTGATGCTACGTATTCTTTTATATTCGAAGCTTCCACGGGAACATTGCTTTACAGGAGTGatcatgatcatgatcatgTAAACCTATTGCATAGATGGAAAGAGATTTTAGGTTGGCAATGGCATGAACTGCATTCTAAGAGGTTGCAGGATACATTTTCTGCTAATTTTGATGATTCTTTTCACTTGGAAATTTTGAAGGAAGCATTGTTGAGAGCAATCCATGATATTGATGCGAAGTTTTCTGAGGAAGCCTTTAGAAATAACCTTCATTCAGGATCTACAGCAACAATTGTATTAGTTGCAGATGATAAAATTTTGGTTGCGAATATTGGAGACTCTAAGGCTTTCTTGTGCTCTGAAAATTTTCTGGCGCCTAAGGAGGCTAAAGTGAAGGAATTGACTAGCGATCATCATCCTGACAGAGAGGATGAAAAAACTCGGGTGGAAGCAGCTGGTGGTCAAGTTCTAAATTGGGGTGGTTTGCCTCGTGTAAATGGTCAGCTGGCTATTACTCGGGCTATTGGTGATGTGTTCTTTAAAAGTTATGGAGTTATATCTGCACCAGAAGTGACTGATTGGCAGCCTCTAACTGCTAATGATAGCTACTTGGTGGCTGCATCTGATGGAGTCTTTGAGAAGTTGAGTGTGCAAGATGTCTGTGATTTGTTGTGGGAAGTACACCGTTTTAGTGACATGAGATCGGAGTGCACCTCTTCATCTTCCTATTCATTAGCAGATTTTATTATTAACACTGCCTTAAAAAAGGGCAGTATGGACAATATGGCAGCAGTTGTTGTTCCTCTGGAATCTGCTAAATCTTCTGCGAACTCACTTAGAAGAAGCTACACTGAAAGTGAGGATGCAGGCTTCCCATTATTTGGGCTGCAGGAATCAGCTTACAGAAGCTCAGCTAATGATATCACCTCTGATCTATTGCACCTGGAGCACCCTCATCTGATAGATACCAAGTTTAAGCGAATATTGGTTGAAGTGAAACATGGTGAttttggatgtttttatttatCTGAAAATCTTGATGATTCAGTGGATTCTAAGTGGCCTCCCAAAAAAGATGACCAGGAAGACTATTTGTATGAACTACCCCAGCCTCTACCAGATGCCCTTCATGAACAAGCTGCAGTAGATGGCCCTGTAATTTTGTACAATGACCAAAACTTCTGCTTTCACCTAAGTTCAACTATCAATCAAGCCAAAGACCAATGCATAAACCCTGAAGGCTTTGCCAGTTTTATTGGTCTTCTTGAATCAATTCCTTTAATTGATGCTGGTTCAGATAATGAATCTTCTGATTATTCGATGCCTGATTCAAGGTATGTATTAAGGAGGAGCTTTGGTCGTGGATCATATGGCGAAGTATGGTTGGCTTTCCATTGGAATTGTAATGAAGGTAATATTACTGCAGAAATGGGCAAGGGTGACAATAATAGAAACGGCAGCTCAAGTAATCCTGAGTGTCAGGATGGTCCTTCTAACTACACCATGTACATTTTGAAACGTATAATGGTAGAGAAAGGGTCTGCTGTGTACTTAAGTGGGCTGAGGGAAAAATATTTTGGAGAAATTTTCTTAAATGGTTCTGAGTATtcatttcaaaacaaatttcgACTGGAAGGAGCCATATATGAAGAAGGTTTGAACCATATTGCAAGATATGTGGAATCTTTTGAGTCTCGGTCCAATGAAATATGGCTTGTATTCAGTTATGAGGGAGTGTCATTGTCAAAGCTTTTATATACTGTAGAAGATACAAATAATACCGCGGAGAAAGAAAGACTTGAGCAAGTGAAACAGGTTCAGATACTACGCCCATCAAAGTGGTGGCGTTGGTTGAAAACGACAGAAGAAGGGCAGGAGGAAATGCGCAAGCTTATCTGGCAACTGTTATTGGCACTCAAGTCTTGTCACGACCGCAATATCACACACAGAGACATTAAACCCGagaatATGGTGATATGCTTTGAAGATCCGGAGTCAAGGAGATGCTTGAAAGATACTCCAACAAAAGTTAATAATTTTTCCACCAAAATGCGCATTATTGACTTCGGAAGTGGAATTGATGAATTCACAATAAAacacttatatgcttctactgGGCCTTCTAGAGCTGAACAAACTTACGAGTACACACCTCCTGAAGCTTTGCTAAATGCTACGTGGTATCAAGGGCCAACAAGCTCAACTTTGAAGTATGACATGTGGAGTGTTGGTGTTGTGATGTTAGAAATGGTGTTAGGGACACCAAATATTTTCCAGATAAATGCTTTAACGCGTGCTCTTTTGGACCGGCATCTTGAGGGCTGGAATGAGGGTGTGAAGGAGCTGGCATACAGACTTAGATCGTTCATGGAATTGTGCATCTTAATCCCTGGGGTTTCTGGCAACTCAAAGAAGTATCACAAAGTGAATCAAGTTGGTGTTTCGCCTGCATCCTGGAAATGCTCTGAAGAATTCTTTTCTAGACAAATTAAGGCTAGAGATCCTCTTAAAATAGGTTTTTCAAACATCTGGGCTTTACGGTTGGTGCGCCGTCTGCTACTATGGGACCCAgAGGATCGGCCAAGTGTTGACGAGGCACTTCGGCATCCCTATTTCCAACCTCCACCAAGAGGATAA 3060 0.4082 MMIRNIISSQNLFFALGFLLSTTTIPFAYSESSTCLTVYKDGGAPAVFKSPKCPRWNLFDYNSHPQSTTRCQSAKLQGRRKSQEDRTLCVLDVRIPFPGAMGIKDVAVGIVAVFDGHNGAEASEMASKLLMEYFVLHTYFLLDATYSFIFEASTGTLLYRSDHDHDHVNLLHRWKEILGWQWHELHSKRLQDTFSANFDDSFHLEILKEALLRAIHDIDAKFSEEAFRNNLHSGSTATIVLVADDKILVANIGDSKAFLCSENFLAPKEAKVKELTSDHHPDREDEKTRVEAAGGQVLNWGGLPRVNGQLAITRAIGDVFFKSYGVISAPEVTDWQPLTANDSYLVAASDGVFEKLSVQDVCDLLWEVHRFSDMRSECTSSSSYSLADFIINTALKKGSMDNMAAVVVPLESAKSSANSLRRSYTESEDAGFPLFGLQESAYRSSANDITSDLLHLEHPHLIDTKFKRILVEVKHGDFGCFYLSENLDDSVDSKWPPKKDDQEDYLYELPQPLPDALHEQAAVDGPVILYNDQNFCFHLSSTINQAKDQCINPEGFASFIGLLESIPLIDAGSDNESSDYSMPDSRYVLRRSFGRGSYGEVWLAFHWNCNEGNITAEMGKGDNNRNGSSSNPECQDGPSNYTMYILKRIMVEKGSAVYLSGLREKYFGEIFLNGSEYSFQNKFRLEGAIYEEGLNHIARYVESFESRSNEIWLVFSYEGVSLSKLLYTVEDTNNTAEKERLEQVKQVQILRPSKWWRWLKTTEEGQEEMRKLIWQLLLALKSCHDRNITHRDIKPENMVICFEDPESRRCLKDTPTKVNNFSTKMRIIDFGSGIDEFTIKHLYASTGPSRAEQTYEYTPPEALLNATWYQGPTSSTLKYDMWSVGVVMLEMVLGTPNIFQINALTRALLDRHLEGWNEGVKELAYRLRSFMELCILIPGVSGNSKKYHKVNQVGVSPASWKCSEEFFSRQIKARDPLKIGFSNIWALRLVRRLLLWDPEDRPSVDEALRHPYFQPPPRG 1019
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02794 1019 ProSiteProfiles PPM-type phosphatase domain profile. 70 410 IPR001932 -
Tsu01g02794 1019 SUPERFAMILY Protein kinase-like (PK-like) 582 1015 IPR011009 -
Tsu01g02794 1019 Pfam Protein kinase domain 757 1013 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g02794 1019 CDD PP2Cc 70 410 IPR001932 -
Tsu01g02794 1019 PANTHER ALPHABET, ISOFORM E-RELATED 24 573 - -
Tsu01g02794 1019 Pfam Protein phosphatase 2C 168 403 IPR001932 -
Tsu01g02794 1019 SMART PP2C_4 62 408 IPR001932 -
Tsu01g02794 1019 Gene3D Transferase(Phosphotransferase) domain 1 753 1014 - -
Tsu01g02794 1019 PANTHER PROTEIN PHOSPHATASE 2C 50-RELATED 24 573 - -
Tsu01g02794 1019 ProSiteProfiles Protein kinase domain profile. 587 1013 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu01g02794 1019 ProSitePatterns Serine/Threonine protein kinases active-site signature. 788 800 IPR008271 GO:0004672|GO:0006468
Tsu01g02794 1019 SUPERFAMILY PP2C-like 64 411 IPR036457 -
Tsu01g02794 1019 Gene3D - 64 418 IPR036457 -
Tsu01g02794 1019 SMART serkin_6 587 1013 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02794 Tsu-Chr1 33228402 33242331 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02794 651 1017 PP2C-type Phosphatase Gene Family AT3G63340 66.842 5.48e-179 523
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSKL Tsu01g02794 Pkinase 1.4e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02794 - - lja:Lj5g3v1003920.1 1664.05