Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02791 ATGTTCCCTGCACTTATGTCAAATTCCACTTCTTTCTCTAAAGAAACCACTCTTTCTTCTAATACACTTGGTAGATTAAACCACGTAGTTTCAATCATAAATTCTTCACAACAACCTCAAAAGatcaagaaaaaaagaaacCTACCTGGTAATCCAGATCCTGATGCTGAAGTGATAGCTTTATCACCAAAGACATTATTAGCAACAAATAGATTTGTGTGTGAGATCTGCAACAAGGGTTTTCAGAGAGATCAAAACCTTCAACTACATAGGAGAGGACATAACCTACCATGGAAGTTAAAGCAAAGGAACAACAAAGAGGTTATTAAAAAGAGAGCTTATGTTTGTCCAGAACCTTCATGTGTTCATCATAACCCTTCAAGAGCTCTTGGAGATCTTACAGGAATTAAGAAACATTATTCTAGAAAACATGGTgagaagaaatggaaatgtGATAAGTGCTCAAAGATTTATGCTGTTCACTCTGATTGGAAAGCTCACTCTAAAACTTGTGGTACTAGAGAATATAAATGTGATTGTGGTACAGTTTTTTCCAGGAAGGACAGCTTCATAACACACAGAGCATTTTGTGATGCATTGGCTGAAGAAAGTGCAAGAATGTCAGCAAATATCCAATTATCCACCACAAACCCACTAACCCAATCTCTCTTCCTCTTCCCAAATCAACAAAGCCAAATCACATGGGACCCACCTCAACAAAACCCTAACCCTTATACTACTCTTACATCATCCCTAGTACACCACAACATGATCAAGCCAGAATCACATCAAAACTTTCACAACaacctctcttcttctcctcttccCTCATTTCTTCATGATCACCCCAACAACCCTAATAAGACCAATATCATGATGACATCATCACCTTTCCACGTCAGCACACAACAACCTTCCTCCACTTCTGCCATGTCACCACACCTCTCAGCAACTGCACTTCTCCAGAAAGCAGCCACCGTCGGAGCCACCGCCATCACAGGTGGCCAATCCGTTCATATGCCACGTCAGCTCAGCATGAGTGAGTTTGGATCGGTGACGCAGCTCGACTCAGTTGATCACTACATTAACAACATGAGAGGCCGGAACCTTAAGAATGACGATCTTACGAGGGACTTTCTAGGCCTTACTAATGGCGGAGGAAATGGTAGTTCCGTTGACGTTAGCATAGACATAAAGGATATGCTAACATTCACAGGAGGTTTAGAGTATCACGGCCACCAACCTCATGAAAACATGACGATGTTCGGGCAGTCACAACAAGGTTTTGGTTTTCTTGGGACAACAGCATCTGTTCCCGAGTCATGGGGGAATTGTTAG 1338 0.4013 MFPALMSNSTSFSKETTLSSNTLGRLNHVVSIINSSQQPQKIKKKRNLPGNPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNNKEVIKKRAYVCPEPSCVHHNPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKIYAVHSDWKAHSKTCGTREYKCDCGTVFSRKDSFITHRAFCDALAEESARMSANIQLSTTNPLTQSLFLFPNQQSQITWDPPQQNPNPYTTLTSSLVHHNMIKPESHQNFHNNLSSSPLPSFLHDHPNNPNKTNIMMTSSPFHVSTQQPSSTSAMSPHLSATALLQKAATVGATAITGGQSVHMPRQLSMSEFGSVTQLDSVDHYINNMRGRNLKNDDLTRDFLGLTNGGGNGSSVDVSIDIKDMLTFTGGLEYHGHQPHENMTMFGQSQQGFGFLGTTASVPESWGNC 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02791 445 Pfam Zinc finger, C2H2 type 72 94 IPR013087 -
Tsu01g02791 445 Gene3D Classic Zinc Finger 51 121 - -
Tsu01g02791 445 ProSiteProfiles Zinc finger C2H2 type domain profile. 72 94 IPR013087 -
Tsu01g02791 445 SMART c2h2final6 72 94 IPR013087 -
Tsu01g02791 445 SMART c2h2final6 149 169 IPR013087 -
Tsu01g02791 445 SMART c2h2final6 114 144 IPR013087 -
Tsu01g02791 445 MobiDBLite consensus disorder prediction 35 55 - -
Tsu01g02791 445 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 9 420 - -
Tsu01g02791 445 PANTHER PROTEIN INDETERMINATE-DOMAIN 12 9 420 - -
Tsu01g02791 445 ProSitePatterns Zinc finger C2H2 type domain signature. 74 94 IPR013087 -
Tsu01g02791 445 Gene3D Classic Zinc Finger 126 207 - -
Tsu01g02791 445 SUPERFAMILY beta-beta-alpha zinc fingers 71 169 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02791 Tsu-Chr1 33123286 33127100 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02791 26 410 IDZ Gene Family AT4G02670 51.990 3.71e-124 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tsu01g02791 zf-C2H2 0.0044 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02791 K25870 - gmx:100780056 553.132