Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02756 ATGTCGAATCACCCTTCTGATACTCCCGCCGACGATTTCCTCGAACAAATTCTCGGCCTCCCGAATTTCACCTCCGCCGACGGTACCGACACTTCTTCCTTAGCTGCTCCGATGATGCTGCAGCTCAACTCCGGCGACGCAGCCACTCACCTTGGAGCCGGAGGTGGATTTCATGCGCCGGTTTACCATTTGGGACTGAGCTTGGACCAAGGCAAAGGAGGGTTCTTGAAGCCCGATGATGCTTCCGGAAGTGGGAAGCGTTTCCGGGAAGATGTTGTTGATACCACCAGACCTAAGAATACTTTTCATGGGCAACCCATGCCTACTACAGTTCCTACTGCTCCACATCCACCAGCAATGCGTCCTAGAGTGCGGGCAAGAAGAGGTCAGGCTACAGATCCACACAGCATAGCTGAAAGGTTGCGCAGAGAAAGAATAGCTGAAAGAATCAGGGCTTTGCAAGAACTTGTTCCTAGTGTCAACAAGACAGATCGAGCTGCCATGCTGGATGAAATTGTGGATTATGTGAAATTCTTAAGACTTCAAGTGAAGGTTTTGAGCATGAGTAGATTGGGTGGAGCCGGTGCAGTGGCGCCACTGGTCACTGACATCCCATTATCGTCAGTCGAGGAAGAAGGAAGTGAGAGTGGGAGAAACCAACCAGCTTGGGAGAAGTGGTCTAATGATGGCACAGAAAAGCAAGTAGCTAAGCTCATGGAAGAAAATGTAGGGGCTGCGATGCAGTTTCTTCAATCAAAGGCACTCTGCATCATGCCCATCTCACTGGCATCAGCAATATACCAATCACAACCATCAGACAACTCCAGTATAGTTAAGCCTGAAACTACTCCTCCTCCATAG 861 0.4994 MSNHPSDTPADDFLEQILGLPNFTSADGTDTSSLAAPMMLQLNSGDAATHLGAGGGFHAPVYHLGLSLDQGKGGFLKPDDASGSGKRFREDVVDTTRPKNTFHGQPMPTTVPTAPHPPAMRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLVTDIPLSSVEEEGSESGRNQPAWEKWSNDGTEKQVAKLMEENVGAAMQFLQSKALCIMPISLASAIYQSQPSDNSSIVKPETTPPP 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02756 286 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 7 275 - -
Tsu01g02756 286 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 128 189 IPR036638 GO:0046983
Tsu01g02756 286 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 7 275 - -
Tsu01g02756 286 Gene3D - 125 187 IPR036638 GO:0046983
Tsu01g02756 286 SMART finulus 136 185 IPR011598 GO:0046983
Tsu01g02756 286 Pfam Helix-loop-helix DNA-binding domain 135 179 IPR011598 GO:0046983
Tsu01g02756 286 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 130 179 IPR011598 GO:0046983
Tsu01g02756 286 MobiDBLite consensus disorder prediction 97 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02756 Tsu-Chr1 32239934 32244731 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02756 57 285 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 78.723 5.64e-116 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu01g02756 HLH 1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02756 - - gmx:100793177 437.573
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g02756 01 32239934 32244731 Tsu01g03379 01 41802401 41809701 ECH
Tsu01g02756 01 32239934 32244731 Tsu01g02756 01 32239934 32244731 ECH