Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02739 ATGGTTGATGAACCATCAATGGCAGAACCTAcagttaataggtcagaggatgaccATCAAGAGGTTGAAGATACTATGGATGAAGAACAAGTTGATGGCGATCATGTGGATGCAGAACCAGTTACTGAAGACTTGCTGCGTGCAAAAGTTTTCAGAACAACTCGTACAAAGCATGGCATCACtaagggaaagaagagacaaaggtcagatgcatGTTTTGACCGATTTAaagccaaagctaagcatattcctgaggaggaaatagctcagccatccaataTTGAAACCACTCAACCATCACCCAcaattctcactgaggaagagattctgaaggaaacatctttcagagtttctcctatTCATGAAGCCTCTGAACCACAAAATAACACTTCATCTAAACCAAccatatcaattccatcagactctccaaaaccttcatcacctaTAACACCTTCTGAGATGCCTATAGATACTgatattgcaataaatgatagaattgatactccagatgatcatAAGATTCCACACAAGACCAAGCGTGGAGAAGCTGCACTTGCTAGATTGAAGGTTTATGAGGGAATTCCTCCTCCATATGACAAGATCAAGAGGATGGTTGTTCCTGATGCTCTTAAGTAA 636 0.2547 MVDEPSMAEPTVNRSEDDHQEVEDTMDEEQVDGDHVDAEPVTEDLLRAKVFRTTRTKHGITKGKKRQRSDACFDRFKAKAKHIPEEEIAQPSNIETTQPSPTILTEEEILKETSFRVSPIHEASEPQNNTSSKPTISIPSDSPKPSSPITPSEMPIDTDIAINDRIDTPDDHKIPHKTKRGEAALARLKVYEGIPPPYDKIKRMVVPDALK 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02739 211 MobiDBLite consensus disorder prediction 82 179 - -
Tsu01g02739 211 Gene3D Ribosomal protein L13 171 211 IPR036899 GO:0003735|GO:0005840|GO:0006412
Tsu01g02739 211 MobiDBLite consensus disorder prediction 90 104 - -
Tsu01g02739 211 SUPERFAMILY Ribosomal protein L13 174 209 IPR036899 GO:0003735|GO:0005840|GO:0006412
Tsu01g02739 211 Coils Coil 12 32 - -
Tsu01g02739 211 MobiDBLite consensus disorder prediction 1 38 - -
Tsu01g02739 211 MobiDBLite consensus disorder prediction 163 179 - -
Tsu01g02739 211 MobiDBLite consensus disorder prediction 120 143 - -
Tsu01g02739 211 PANTHER 60S RIBOSOMAL PROTEIN L13A-4 173 211 - -
Tsu01g02739 211 PANTHER RIBOSOMAL PROTEIN L13 173 211 IPR005822 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02739 Tsu-Chr1 31790264 31793150 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02739 174 211 Cytoplasmic Ribosomal Protein Gene Family AT4G13170 92.105 8.65e-19 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02739 K02872 - gmx:100813340 80.8777