Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02731 ATGGGCCTTAGAGATGTCGGTGCTTCACTTCCACCTGGGTTTCGGTTTTATCCAAGTGATGAAGAGTTGGTTCTTCATTACCTTTACAAAAAGATCACAAATGAGGATGTTCTCAAAGGTACCTTGGAGGAAATTGACTTACATACATGCGAGCCTTGGCAACTTCCTgAGGTTGCTAAGCTCAACGCAACTGAATGGTACTTCTTCAGCTTTCGTGACCGTAAATATGCAACTGGCTATCGAACCAATAGGGCTACGACATCTGGCTATTGGAAAGCAACAGGGAAGGATCGAACGGTGTTTGATCCAATCACTGCTGAGGTTGTAGGAATGAGGAAAACATTGGTGTTCTATAGGAATAGAGCTCCAAATGGAATCAAAACAGGTTGGATCATGCATGAGTTTAGGTTGGAGACCCCACATATGCCACCTAAGGAAGACTGGGTTTTGTGTAGAGTATTTCATAAAGGCAAAACAGATAATAGTGCCAAATTAAGCTCAAAAGACATGTATGAAACTATAGCCCCATCCTTAACCAACCAAACCATGCCAATTGGTTATAACCAATTTGCTTCTTTCTCATCCTCAATGAAAACCCATCATTGTCATCCAAATGAGAACCAAAATAATTCTTTGATGAATCTACTTCAATTTTCAAAGGATGCAAACACCACCAATTGTAGTAGTGTAACTCAAATTAGTCCTAAATGTGATGATGAGTATGGATTTTTGTGGGACATGGATTTTGAAGATCATCATGATGGTGTCTCCTCATCAAACTTGGAAGGAATGAGATTCgaaattgataataataattgcaTGGTCTTGCTATAA 834 0.3897 MGLRDVGASLPPGFRFYPSDEELVLHYLYKKITNEDVLKGTLEEIDLHTCEPWQLPEVAKLNATEWYFFSFRDRKYATGYRTNRATTSGYWKATGKDRTVFDPITAEVVGMRKTLVFYRNRAPNGIKTGWIMHEFRLETPHMPPKEDWVLCRVFHKGKTDNSAKLSSKDMYETIAPSLTNQTMPIGYNQFASFSSSMKTHHCHPNENQNNSLMNLLQFSKDANTTNCSSVTQISPKCDDEYGFLWDMDFEDHHDGVSSSNLEGMRFEIDNNNCMVLL 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02731 277 Coils Coil 277 277 - -
Tsu01g02731 277 Gene3D NAC domain 19 160 IPR036093 GO:0003677|GO:0006355
Tsu01g02731 277 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 271 - -
Tsu01g02731 277 Pfam No apical meristem (NAM) protein 11 137 IPR003441 GO:0003677|GO:0006355
Tsu01g02731 277 ProSiteProfiles NAC domain profile. 10 156 IPR003441 GO:0003677|GO:0006355
Tsu01g02731 277 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 1 271 - -
Tsu01g02731 277 SUPERFAMILY NAC domain 8 156 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02731 Tsu-Chr1 31427997 31432853 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02731 9 156 NAC Transcription Factor Family AT1G76420 59.603 6.09e-63 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Tsu01g02731 NAM 2.3e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02731 - - ccaj:109788642 461.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g03697 07 43129795 43139935 Tsu01g02731 01 31427997 31432853 PCT