Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02725 ATGGCAGAAGCACCAGGAGGACGCGGACGCGGTAGGCCTCGAAGGAATGTGGCAGAGGAGGAAGATCAACCTCAGTATCAATATTCCGATCCGAATGCAaatatgtgggcacatatgatgcatcagcaacaacaatttCAAGCTCAACAAGCCCAACGCCatgaggaaatgatgatgatgttccaacaacaaatggGCAATGCACAGACTCAGGACACAGGAAGTGCAGCGTTCAGGGAGTTTTGTCGGATGAATCCTCCTGAGTTCGTTGGAGAGTATGTTCCTTCGGTTtcaagagaatggattcagagaATGAGTGGGATTTTGGATTCAATGGCGTGTACTGGATTGGAAAAATTTACGTTCGCGACAAGGTTCCTTCGCGGAGCGGCTTGTGATTGGTGGGAAGGTGTTAGAGCTTACATGACTGCAAGCCAGATGGAGATGACATGGGCTAATTTCAGACGTCTCTTCATCGACCATTACATTCCCGAGAGCTATAGGATGTCAATGGAACGGGAACTGATTGAACTTAAGCAAGCAGGTAAGTCGGTGGCGGAGTATATAGCCAAGTTTAACGAGTTAGTGCGGTATGTGGCGGATGGTGATGATGCTCCTACCGAGGCGTGGAAAATTAAGAAGTATCGTTTCGGGTTGAGAGCTGATATTGCGCATGATGTATCTATGCAGCCAGTGGCCAGTTTTGGTGAGTTGATCCAGAAGAGTTATCATGCTGAGTCGAGCCTTGAAGCCATGAGAAAAGAAAGGTTTGAGGTGAACCAAAAGAGACGTGATTCGGGAAAATATAAGGAGCAGCTGAAGCCAAGGGGTTCTCCGCAGAAGGGAAAACAAAATGTTCCTCAGAGATCACACCCAGCATGTCCAGAGTGTGGAATGTTCCATCATGGAGAATGTATGAAGGGAAAGGGTGTATGTTTCCACTGCAAACAACCCGGTCACTATAAGAATGAATGTCCAAAGTTGCACGGTTCCAGAGGTTCGAGTGGAACAACAAAGAGCAAGGGTCGAGTGTATTCTCTTGATGGTGAACAAGCTAGAGGTAATAATCCCTTAATTATTGATGCCATGAAGGAAGCCAATCATAAAGGGTGGGGTAAGGTTCAATTTGAAAGCGACTCACAAGTGTTGGCTGAAGCTATTCGAACCAGGCGTAGTGGATCTGTTTTATTTCTGTCTCATTTGAGTTTCACAACCATGCATATAGGTCAAACGGATACAGCTTCTGTAAAATGTCTAATCAACAGCATTTCTCGATTCATTCATCTAGTTTCTTGCCAAACGGTGAAACCTATGCCCTTTCAGAAGATCTGTAATAATATGGTCGGCGTGTTAAAGCGTTTGAAGCCAGTGCTTGATGACGTTATGGATTACAAAATTCCTTTACATGAAAATTTATGTAAAGTATGTGAAGAATTGGATATACGAGTTAATGAAGCAAGAGATTTCATAGAAAAATGGGGTTCAAAGATGAGCAAGATTCACAGTGTTCTTCAAAGTGGAACAATGTTGATCAAGTTACAGAGCACTTCACTTGACATTTGTCACATGATAGTTAAATCCTTACAGTCACCTCCATCTGCATCAGTTTTGGCTAACCTCCAGCACTATATCGAAGAACTTCAGTGTCTCAAGAAGGAAACAGCAATGGTCTATATAGAAAAGGCGCTGAGAAACCAAAGAGATAATATTGAACCTTGCAACGAGAATCTAAAGGAAATTATTGAGTTACTTAAATTGACATCAACTCAAGAGCTCTTGAAAGAAACTATTGCTGTGGAAAAGGAAAGATTGAACGCAGAAGGACATAAAATGAAAGGGGACTTGGAAGAAATCAACGAAATTGTGAATCTAGTCCGCAACATACGTGATTATGTGATGAAAACCGAGTGCTTTGCAGTCAAAAGTGGCGTCTCTTTCCCTCCGTACTTTCGCTGTCCTTTATCATTGGAACTCATGTTGGATCCTGTTATTGTGGCTTCCGGTCAAACATATGAGAGGCAATCTATCCAAAAGTGGCTTGATCATGGGATGACTGTTTGTCCTAAGACTCGTCAACGACTTACTCACACAAACCTCATTCCTAATTATACCGTCAAAGCCATGGTGGCAACTTGGTGCGATGAAAATAACGCCAATCATTCAAGTAACACTGATCATTTATTGTCTCAAGAATTACCTAGTGGAAATTCAATTTCAAGATCATGTCTTCAAACTGGAAATGCATTTGAAGAACGAAAGGGTGATAACTCTTTCAGATCAAATGGAGAATGCAATGGATGCCAGAATGTAGAAATAGAAAAGTGGGAGCTACAATCCCCATATATTCAGAGCAGAAGTGAATCATTTTCAAGTTCAATTTCTAGTAGTGATTGTCTACTTGCAGTTTTAAAAGATGTATCAAGGATGTCCgataaacatcaaaatatgaaggGTTCGTCCGTAGATGCAGGGGGGAtggaaaatggaaaaaataataacagtAATATTACTAATAGTCATTCAAGAGTTGATTCACATCACGTGTCAAACTCGGGGTTGAATGAATTGACCACCTCATCTCATGTCAATAAATTGATCGAAGACCTCCAAAGCCAATCAATTGAAGTGCAAACTACAGCTGCAGAAGAATTGCGGCTCCTTACAAGGCAGAACACGAAAAACCGTATCATTGTAGGGAAGTGTGGGGCTGTCACGCCTTTACTTTCGCTTCTATATTCAAACGGGAAAGTAACACAAGAGCATGCCGTAACAGCTCTTCTGAATTTGTCAATTAATGAAGACAACAAGGCCTTGATTATGGAAGCGGGAGCTACAGAACCGCTTATCCATGTTTTGAAGACAGGAAATGACAGTGCCATGGAGAATTCCGCGGCAGCTCTATTCAGCCTCTCTGTAATGGAGAACAGTAAAGCGAAAATCGGCCGTTCTGGTGCAGTTAAAGCTTTGGTGGAACTTCTTGCCTCAGGAGCACTTAGAGGAAAGAAGGATGCAGCTACTGCTTTATATAGCCTATCAATATTTCACGAGAATAAAGCTCGAATAGTTCAAGCTGGGGCTGTGAAAATTCTGGTTCGGTTAACAGATCCTGCTGATGGAATGGTTGATAAAGCTGTTGCTCTTCTGTCGAACCTGTCAACAATCACAGAGGGAAGGTTAGAAATTGCAAGAGAAGGTGGCATACCTTCATTAGTTGAAATTGTTGAATCTGGTTCTCAGAGCGGAAAGGAAAATGCTGCCTCCATTCTCTTACAATTATGCCTTCATAGTTCCAGGTTCTGTACACTTGTTTTACAAGAAGGAGCTGTACCTCCTCTAGTTGCATTATCTCAATCTGGTACACCAAGGGCAAAGGAAAAGGCACAACAACTTCTCAGTCATTTTCGTAATCAGCGGGAAGGAGCTACTGTGAAGGGAAAAACATGA 3444 0.4082 MAEAPGGRGRGRPRRNVAEEEDQPQYQYSDPNANMWAHMMHQQQQFQAQQAQRHEEMMMMFQQQMGNAQTQDTGSAAFREFCRMNPPEFVGEYVPSVSREWIQRMSGILDSMACTGLEKFTFATRFLRGAACDWWEGVRAYMTASQMEMTWANFRRLFIDHYIPESYRMSMERELIELKQAGKSVAEYIAKFNELVRYVADGDDAPTEAWKIKKYRFGLRADIAHDVSMQPVASFGELIQKSYHAESSLEAMRKERFEVNQKRRDSGKYKEQLKPRGSPQKGKQNVPQRSHPACPECGMFHHGECMKGKGVCFHCKQPGHYKNECPKLHGSRGSSGTTKSKGRVYSLDGEQARGNNPLIIDAMKEANHKGWGKVQFESDSQVLAEAIRTRRSGSVLFLSHLSFTTMHIGQTDTASVKCLINSISRFIHLVSCQTVKPMPFQKICNNMVGVLKRLKPVLDDVMDYKIPLHENLCKVCEELDIRVNEARDFIEKWGSKMSKIHSVLQSGTMLIKLQSTSLDICHMIVKSLQSPPSASVLANLQHYIEELQCLKKETAMVYIEKALRNQRDNIEPCNENLKEIIELLKLTSTQELLKETIAVEKERLNAEGHKMKGDLEEINEIVNLVRNIRDYVMKTECFAVKSGVSFPPYFRCPLSLELMLDPVIVASGQTYERQSIQKWLDHGMTVCPKTRQRLTHTNLIPNYTVKAMVATWCDENNANHSSNTDHLLSQELPSGNSISRSCLQTGNAFEERKGDNSFRSNGECNGCQNVEIEKWELQSPYIQSRSESFSSSISSSDCLLAVLKDVSRMSDKHQNMKGSSVDAGGMENGKNNNSNITNSHSRVDSHHVSNSGLNELTTSSHVNKLIEDLQSQSIEVQTTAAEELRLLTRQNTKNRIIVGKCGAVTPLLSLLYSNGKVTQEHAVTALLNLSINEDNKALIMEAGATEPLIHVLKTGNDSAMENSAAALFSLSVMENSKAKIGRSGAVKALVELLASGALRGKKDAATALYSLSIFHENKARIVQAGAVKILVRLTDPADGMVDKAVALLSNLSTITEGRLEIAREGGIPSLVEIVESGSQSGKENAASILLQLCLHSSRFCTLVLQEGAVPPLVALSQSGTPRAKEKAQQLLSHFRNQREGATVKGKT 1147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02725 1147 MobiDBLite consensus disorder prediction 825 854 - -
Tsu01g02725 1147 MobiDBLite consensus disorder prediction 258 277 - -
Tsu01g02725 1147 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 639 731 IPR013083 -
Tsu01g02725 1147 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 1025 1066 IPR000225 GO:0005515
Tsu01g02725 1147 MobiDBLite consensus disorder prediction 258 291 - -
Tsu01g02725 1147 PANTHER U BOX DOMAIN-CONTAINING 820 1142 - -
Tsu01g02725 1147 PANTHER U BOX DOMAIN-CONTAINING 416 750 - -
Tsu01g02725 1147 SMART c2hcfinal6 311 327 IPR001878 GO:0003676|GO:0008270
Tsu01g02725 1147 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 3 416 750 - -
Tsu01g02725 1147 Gene3D - 783 936 IPR011989 -
Tsu01g02725 1147 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 943 985 IPR000225 GO:0005515
Tsu01g02725 1147 Pfam Retrotransposon gag protein 122 220 IPR005162 -
Tsu01g02725 1147 SUPERFAMILY RING/U-box 645 718 - -
Tsu01g02725 1147 Pfam Zinc knuckle 311 327 IPR001878 GO:0003676|GO:0008270
Tsu01g02725 1147 MobiDBLite consensus disorder prediction 1 30 - -
Tsu01g02725 1147 Pfam U-box domain 647 717 IPR003613 GO:0004842|GO:0016567
Tsu01g02725 1147 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 984 1026 IPR000225 GO:0005515
Tsu01g02725 1147 SMART arm_5 891 931 IPR000225 GO:0005515
Tsu01g02725 1147 SMART arm_5 932 972 IPR000225 GO:0005515
Tsu01g02725 1147 SMART arm_5 1054 1094 IPR000225 GO:0005515
Tsu01g02725 1147 SMART arm_5 1014 1053 IPR000225 GO:0005515
Tsu01g02725 1147 SMART arm_5 973 1013 IPR000225 GO:0005515
Tsu01g02725 1147 Pfam Armadillo/beta-catenin-like repeat 978 1012 IPR000225 GO:0005515
Tsu01g02725 1147 Pfam Armadillo/beta-catenin-like repeat 891 930 IPR000225 GO:0005515
Tsu01g02725 1147 SMART Ubox_2 649 712 IPR003613 GO:0004842|GO:0016567
Tsu01g02725 1147 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 3 820 1142 - -
Tsu01g02725 1147 MobiDBLite consensus disorder prediction 811 854 - -
Tsu01g02725 1147 Gene3D - 937 1144 IPR011989 -
Tsu01g02725 1147 CDD RING-Ubox_PUB 650 692 IPR045210 -
Tsu01g02725 1147 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 902 944 IPR000225 GO:0005515
Tsu01g02725 1147 SUPERFAMILY ARM repeat 853 1134 IPR016024 -
Tsu01g02725 1147 ProSiteProfiles U-box domain profile. 645 719 IPR003613 GO:0004842|GO:0016567
Tsu01g02725 1147 ProSiteProfiles Zinc finger CCHC-type profile. 312 327 IPR001878 GO:0003676|GO:0008270
Tsu01g02725 1147 Gene3D - 306 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02725 Tsu-Chr1 31200490 31208885 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02725 412 1147 U-box Gene Family AT3G54790 52.673 0.0 695
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02725 - - mtr:MTR_1g069845 1236.86