Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02718 ATGCCTTCGCTACTTTCTCCTGGCAAAATCCACAAACTCCAGATCGAGAATTTCAAATCCTACAAGGGTTTCCAAGATATCGGTCCTTTCTATGATTTCACCGCCATTATTGGCCCTAACGGTTCCGGCAAGTCCAACCTTATGGACGCTATCAGTTTCGTTCTTGGCGTCAGAACCGGCCAACTCCGTGGTGCTCAACTCAAAGATCTCATTTACGCATTTGATGATAGAGATAAAGAACAGAAAGGTCGTAAAGCTTTTGTTCGTTTGATTTATCGACTTGCGAACGATTCTGAGATTAAATTCACTAGAACTATTACTTCTGCTGGAGCAAGTGAGTATCGTATTGATGATAGTGTTGTTACTTGGGATGTGTATAATGCTAAACTCAAATCGTTAGGGATTCTCGTTAAGGCTCGCAATTTCTTGGTCTTTCAGGGTGATGTGGAATCTATTGCGTCTAAGAATCCGAAGGAGCTTACAGGTCTGATTGAGCAGATATCTGGATCTGATGAGCTTAAGAGAGACTATGAGcagtttgaagaagaaaaagctaCTGCCGAGGAGAAATCGGCACTTGTTTATCAGAAGAAAAAGACAATGGTTATGGAGAGAAAGCAGAAGAAAGAACAAAAGGAAGAGGCAGAGAAACATCTTCGATTGCAAGATCAATTGAAATCTATGAAGAAGGAACATTTCTTGTGGCAGTTGTACAATATAGAAAATGATATTGTTAAAACAACCGAGGAACTTGAAACTGATAAAAGAAGTCGTGAAGGTGTTATGGAAGAACTAGAAAATTATGAACATGAAGCCagtaaaaagaagaaagagcAAGCCAAATATATGAAAGAAGTTATGCTACGTGAGAAGAAAATAACTGAGAAAAGCAACAAACTTGACAGGACCCAACCTGAGCTTCTTAAGTTAAAGGAGGAAATGTCTCGTATTAgtgcaaaaattaaaaaagggaaGAAGGAGCTTAGCAAAAAAAGGGAAGAACAAAGGAGGCATGCCGATGACATAGCAGGGCTAAAGAGTGGTATTCAGGATCTTACAGCAAAGATGGCAGACCTACAGGAGAAGGGTCGAAATGTCGGTGATCAGCTCATGTTAGATGGGAATGACTTGGAGGAATATTTTAGAATAAAAGAGGAAGCTGGGATGAAAACTGCAAAGCTTAGAGAGGAAAAAGAACTTCTAGATAGGCAGCAACATGCTGATAGTGAAGCTCAAAATAATTTGGAAGAAAATCTTCAACAGTTAAAAAACCGGGAGTCTGAGCTGGATTCACAGGAAAAACAGATGCGAGAAAGGCTTGAAAAAATTAAGGATAATCATGCAAAAAATAAGGAAACCGTTGAAAAATTGAATAAAGAACTGCGTGATAtgaaagaaaaacataatgAATCCAAGAGAACATATGATAACTTGAAGATGAAAATTGGCGAAGTAGAAAATAATCTCCGTGAATTGAAGGCTGATAGATATGAAAATGAGAGAGATGCTAAATTGTCTCAGGCTGTGGCGACTCTGAAACGATTGTTTCAAGGAGTCCATGGTCGCATGACTGATCTTTGTAGGCCAACACAGAAGAAGTATAACCTAGCCGTTACTGTTGCTATGGGTAAATTAATGGATGCAGTTGTTGTCGAGGATGAAAAGACCGGGAAGGAATGCATCAAGTATTTAAAAGAGCAAAGGCTTCCTCCCCAGACATTTATTCCTCTACAATCTATTCGTGTGAAGCAAATAATGGAAAGGTTACGCTCATTAGGGGGTACAGCAAAACTGGTTTTTGACTGCAAGTTTGATCCCTCCTTGGAGAAGGCAATTCTATTTGCTGTTGGGAATACTCTTGTTTGTGAAGACCTCGAGGAAGCCAAAATTTTAAGCTGGAGTGGGGAGAGATTTAAAGTTGTAACTGTGGATGGAATTTTGCTGACGAAGTCCGGCACAATGACTGGTGGCACTAGTGGTGGAATGGAAGCAAGATCTAAACAGTGGGATGACAAGAAATTTGAAGCATGTGTTAAGAAGAAAGAGCAGTATGAATCAGAGTTGGAACAGCTAGGATCAATAAGGGATATGCACCTTAAAGAGTCTGAAACAGCGGGGAAAAAGAGTGGACTTGAGAAGAAAATTCAATATGCTGAGATTGAAAAGGGAAGCATTGAAGACAAACTTTCAAATTTTAGTCTCGAAAAGAGGACCATCAAAGAAGAAATTGAACGTATTAGTCCAGAACTGAAGAAGTTAAGAGATGCTGTTGAAAAGAGAAATAAAGAATTACGTACTCTTGAGAAGAGGATAAATGAAATCACTGATCGGATATACAAAGACTTCAGCAAGTCTGTTGGGGTAGCAAACATTCGTGAGTATGAAGAAAATCGACTCAAGGATGCTCAAAATGTAGCAGAGGAGAGGCTGAACCTGAGTAGCCaactttcaaaattaaaatatcaGTTGGAGTATGAGCAAAATCGTGACATGAGTTCTCGAATTCACGAATTGGAATCTTCTGTAACTGCCTTAGAGAATGATTTAAAACGTGTACAGAACAAAGAAGGTGAAGCAAAGTTAGCAGCAGAGACAGCTACTGAGGAGATCAATCAATTGAAGGATGAAGTTAAAGAGTGGAGATCAAAGTCAGATGATTGTGAAAAGGAAATCCATGAATGGAAGAAGAAGGCTTCTACATCCACAACAAGCTTATCCAAACTTAATCGTGGGATAAACTCAAAGGAGACACAGATTGAGCAGTTGATGGGGCAAAAGCAGGAAATATTAGAGAAGTGTGAACTAGAGCAGATTAGCCTTCCAATCATATCAGATCCCATGGATACTGATAGCTCAACACCGGGTCCAGTTTTTGACTTTGATAAGCTTAGTAGGACACTAAAAGATAAACGCTCTGACAGGGATAAAATAGAGGTAGAATTCAAGACAAAAATGGATGCATTGATATCTGAAATAGAAAGAACAGCACCAAATTTGAAGGCATTAGACCAGTACGAGGCTCTGCTTGAAAAAGAAAGAGCTGTAACTGAAGAGTTTGAAGCTGTCAGGAAAGAAGAGCAGGAAAAAGCAAATAGATTCAATGATGTAAAGCAGAAGAGACATGATTTGTTCATGGATGCTTTCAACCATATAGCTGGTAATATCGATAAAATTTACAAACAACTTACAAAGAGCAACACACATCCTCTGGGTGGAACAGCATACTTAAATTTGGAAAATGAAGATGATCCATTTCTACATGGCATGAAGTACACTGCTATGCCACCAACTAAGCGGTTCCGCGACATGGAACAACTATCTGGTGGTGAAAAGACTGTTGCTGCACTTGCGTTGCTATTCTCTATCCATAGtTATAGGCCTTCACCATTTTTCATACTGGATGAAGTTGATGCTGCATTGGACAACTTGAATGTTGCGAAGGTTGCTGGCTTTATTCGATCAAAATCTTGTGAAGGAGCTAGGGTTAATCAGGATGCTGATGGTGGATGTGGTTTTCAGAGTATTGTAATATCTCTGAAAGACAGCTTCTATGACAAAGCTGAATCGTTAATTGGGGTTCTAAGGGACTCGGATAGAGGcTGTTCGGGTACTCTCACATTTGATCTGACTAAATACAGGGAGTCCTAA 3648 0.3868 MPSLLSPGKIHKLQIENFKSYKGFQDIGPFYDFTAIIGPNGSGKSNLMDAISFVLGVRTGQLRGAQLKDLIYAFDDRDKEQKGRKAFVRLIYRLANDSEIKFTRTITSAGASEYRIDDSVVTWDVYNAKLKSLGILVKARNFLVFQGDVESIASKNPKELTGLIEQISGSDELKRDYEQFEEEKATAEEKSALVYQKKKTMVMERKQKKEQKEEAEKHLRLQDQLKSMKKEHFLWQLYNIENDIVKTTEELETDKRSREGVMEELENYEHEASKKKKEQAKYMKEVMLREKKITEKSNKLDRTQPELLKLKEEMSRISAKIKKGKKELSKKREEQRRHADDIAGLKSGIQDLTAKMADLQEKGRNVGDQLMLDGNDLEEYFRIKEEAGMKTAKLREEKELLDRQQHADSEAQNNLEENLQQLKNRESELDSQEKQMRERLEKIKDNHAKNKETVEKLNKELRDMKEKHNESKRTYDNLKMKIGEVENNLRELKADRYENERDAKLSQAVATLKRLFQGVHGRMTDLCRPTQKKYNLAVTVAMGKLMDAVVVEDEKTGKECIKYLKEQRLPPQTFIPLQSIRVKQIMERLRSLGGTAKLVFDCKFDPSLEKAILFAVGNTLVCEDLEEAKILSWSGERFKVVTVDGILLTKSGTMTGGTSGGMEARSKQWDDKKFEACVKKKEQYESELEQLGSIRDMHLKESETAGKKSGLEKKIQYAEIEKGSIEDKLSNFSLEKRTIKEEIERISPELKKLRDAVEKRNKELRTLEKRINEITDRIYKDFSKSVGVANIREYEENRLKDAQNVAEERLNLSSQLSKLKYQLEYEQNRDMSSRIHELESSVTALENDLKRVQNKEGEAKLAAETATEEINQLKDEVKEWRSKSDDCEKEIHEWKKKASTSTTSLSKLNRGINSKETQIEQLMGQKQEILEKCELEQISLPIISDPMDTDSSTPGPVFDFDKLSRTLKDKRSDRDKIEVEFKTKMDALISEIERTAPNLKALDQYEALLEKERAVTEEFEAVRKEEQEKANRFNDVKQKRHDLFMDAFNHIAGNIDKIYKQLTKSNTHPLGGTAYLNLENEDDPFLHGMKYTAMPPTKRFRDMEQLSGGEKTVAALALLFSIHSYRPSPFFILDEVDAALDNLNVAKVAGFIRSKSCEGARVNQDADGGCGFQSIVISLKDSFYDKAESLIGVLRDSDRGCSGTLTFDLTKYRES 1215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02718 1215 Coils Coil 905 932 - -
Tsu01g02718 1215 Coils Coil 342 369 - -
Tsu01g02718 1215 SUPERFAMILY Smc hinge domain 479 676 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Tsu01g02718 1215 SMART SMC_hinge_2 517 632 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Tsu01g02718 1215 CDD ABC_SMC1_euk 10 157 IPR028468 GO:0005524|GO:0007062|GO:0008278|GO:0016887
Tsu01g02718 1215 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 9 1214 - -
Tsu01g02718 1215 Coils Coil 828 897 - -
Tsu01g02718 1215 Pfam SMC proteins Flexible Hinge Domain 517 631 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Tsu01g02718 1215 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 276 IPR027417 -
Tsu01g02718 1215 Gene3D - 943 1214 IPR027417 -
Tsu01g02718 1215 Gene3D - 8 209 IPR027417 -
Tsu01g02718 1215 Gene3D - 578 659 - -
Tsu01g02718 1215 PIRSF SMC 8 1207 IPR024704 GO:0005524|GO:0016887
Tsu01g02718 1215 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES SMC FAMILY MEMBER 9 1214 - -
Tsu01g02718 1215 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 871 1197 IPR027417 -
Tsu01g02718 1215 Gene3D - 495 577 - -
Tsu01g02718 1215 Coils Coil 170 231 - -
Tsu01g02718 1215 Gene3D - 795 938 - -
Tsu01g02718 1215 CDD ABC_SMC1_euk 1094 1209 IPR028468 GO:0005524|GO:0007062|GO:0008278|GO:0016887
Tsu01g02718 1215 Pfam RecF/RecN/SMC N terminal domain 10 1195 IPR003395 -
Tsu01g02718 1215 Coils Coil 750 777 - -
Tsu01g02718 1215 Coils Coil 405 502 - -
Tsu01g02718 1215 Coils Coil 1005 1025 - -
Tsu01g02718 1215 Coils Coil 307 334 - -
Tsu01g02718 1215 Coils Coil 251 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02718 Tsu-Chr1 30994086 31006417 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02718 8 114 Structural Maintenance of Chromosomes family AT5G61460 32.456 1.53e-07 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02718 K06636 - gmx:100791953 1921.36