Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02714 ATGGAGGGAAATAGATCAGTTTCAAACTCAAGAAATGGTAATGGAAATGTAGATCAAATAAAGTATAGAGGAATTCGTAGGAGACCATGGGGAAAATTTGCAGCAGAGATTCGTGATCCAACAAGAAAAGGTACAAGAATATGGCTTGGAACATTTGATACTGCTGAAGAAGCTGCAAGAGCTTATGATGCTGCTGCTTTTCATTTTCGTGGTCATAGAGCTATTCTTAATTTCCCTAATGAATATCAAGCTCctaattcatcttcttcattacCTATGCCTCTTACTATGCCTAATCCTAATCCTAATCCTAATCCTGATCCTaatgcttcttcttcttcctacTCTATTGATGACattaattttgagtttgaattcatGGATAATAAGTTTCTTCAAGAACTCCTTCAAGATGGAACACACAACAATTAG 432 0.3171 MEGNRSVSNSRNGNGNVDQIKYRGIRRRPWGKFAAEIRDPTRKGTRIWLGTFDTAEEAARAYDAAAFHFRGHRAILNFPNEYQAPNSSSSLPMPLTMPNPNPNPNPDPNASSSSYSIDDINFEFEFMDNKFLQELLQDGTHNN 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02714 143 SUPERFAMILY DNA-binding domain 21 80 IPR016177 GO:0003677
Tsu01g02714 143 MobiDBLite consensus disorder prediction 1 20 - -
Tsu01g02714 143 Pfam AP2 domain 21 72 IPR001471 GO:0003700|GO:0006355
Tsu01g02714 143 SMART rav1_2 21 85 IPR001471 GO:0003700|GO:0006355
Tsu01g02714 143 Gene3D AP2/ERF domain 20 80 IPR036955 GO:0003700|GO:0006355
Tsu01g02714 143 MobiDBLite consensus disorder prediction 1 17 - -
Tsu01g02714 143 ProSiteProfiles AP2/ERF domain profile. 21 79 IPR001471 GO:0003700|GO:0006355
Tsu01g02714 143 MobiDBLite consensus disorder prediction 81 114 - -
Tsu01g02714 143 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF105 7 88 - -
Tsu01g02714 143 CDD AP2 21 80 IPR001471 GO:0003700|GO:0006355
Tsu01g02714 143 PRINTS Ethylene responsive element binding protein signature 22 33 IPR001471 GO:0003700|GO:0006355
Tsu01g02714 143 PRINTS Ethylene responsive element binding protein signature 45 61 IPR001471 GO:0003700|GO:0006355
Tsu01g02714 143 PANTHER DNA-BINDING DOMAIN 7 88 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02714 Tsu-Chr1 30895114 30895545 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02714 19 136 AP2-EREBP Transcription Factor Family AT3G23230 55.085 2.51e-38 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tsu01g02714 AP2 1.5e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02714 - - gmx:100779173 143.665