Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02712 ATGGAAATGTTTCAAGAGCATTCAGAAATTCCATTCGAATCATTTAATGATAACGATTATCTTTCTTTCGACATGGTCGATTCCTCACCGAGTTCACAGACACCGGTGTCTCCGAACTCGATGAAGCCATCTGAAGCTAAAGAAGTATTgcagaataataataataagatggATCAGAAGTCATATATAGGTGTAAGAAAAAGACCTTGGGGGAAATTTGCAGCAGAGATAAGAGATACAACAAGAGGTGGAAGAAGAGTTTGGCTTGGAACATTTGATAGTGCTGAAGATGCTGCTTTAGCTTATGATCAAGCTGCATTTTCAATGAGAGGTAATAATGCTGTTCTCAATTTTCCTGTCCAAAGGGTCAAAGAATCTTTGCAAGAGATTCAATATGATTGTAAAAAAGGGTCTTCACCTGCACTTGCACTCAAAGAGAGACACTATGAACAGAGAAAGTTGtcatcaaaatcaacaaagaataataataaagcaGAGAAACAAGAATCAGCAGAGGGATCATCATCAAGTGTGTTGGTGTTAGAAGATTTGGGAGCTGAATATCTTGAGCAATTGCTAAGTATGTCTGATACTGGTAATCAAAATACAAGCACCAGCAGCTTCTTCAAAtcaaattgttaa 642 0.3474 MEMFQEHSEIPFESFNDNDYLSFDMVDSSPSSQTPVSPNSMKPSEAKEVLQNNNNKMDQKSYIGVRKRPWGKFAAEIRDTTRGGRRVWLGTFDSAEDAALAYDQAAFSMRGNNAVLNFPVQRVKESLQEIQYDCKKGSSPALALKERHYEQRKLSSKSTKNNNKAEKQESAEGSSSSVLVLEDLGAEYLEQLLSMSDTGNQNTSTSSFFKSNC 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02712 213 MobiDBLite consensus disorder prediction 151 176 - -
Tsu01g02712 213 MobiDBLite consensus disorder prediction 23 46 - -
Tsu01g02712 213 Gene3D AP2/ERF domain 60 121 IPR036955 GO:0003700|GO:0006355
Tsu01g02712 213 PRINTS Ethylene responsive element binding protein signature 62 73 IPR001471 GO:0003700|GO:0006355
Tsu01g02712 213 PRINTS Ethylene responsive element binding protein signature 85 101 IPR001471 GO:0003700|GO:0006355
Tsu01g02712 213 SMART rav1_2 61 125 IPR001471 GO:0003700|GO:0006355
Tsu01g02712 213 Pfam AP2 domain 61 111 IPR001471 GO:0003700|GO:0006355
Tsu01g02712 213 SUPERFAMILY DNA-binding domain 61 120 IPR016177 GO:0003677
Tsu01g02712 213 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 5 195 - -
Tsu01g02712 213 CDD AP2 60 121 IPR001471 GO:0003700|GO:0006355
Tsu01g02712 213 MobiDBLite consensus disorder prediction 151 167 - -
Tsu01g02712 213 ProSiteProfiles AP2/ERF domain profile. 61 119 IPR001471 GO:0003700|GO:0006355
Tsu01g02712 213 PANTHER DNA-BINDING DOMAIN 5 195 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02712 Tsu-Chr1 30846097 30846738 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02712 50 197 AP2-EREBP Transcription Factor Family AT3G23240 54.054 2.83e-53 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tsu01g02712 AP2 4.7e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02712 K14516 - gmx:100811486 224.172