Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02710 ATGGATATGCAGCAAGATCCTTCAGATATTTCATTTGAATCATTTGGTAATTACAATTATCTTTCCTTCGATATGGTCGATTTCTCATCGAGCTCGCAGACACTGCCAAATAACAAGACAAAACAGTCAATGTTGAAGTCATTATCTGAAGCTAAAGAAGTATTGCAGAAGAATAAGATGGAAAAGTCATCATATATAGGTGTAAGAAAAAGACCTTGGGGGAAATTTGCAGCAGAGATAAGAGATACAACAAGAGGTGGAAGAAGGGTTTGGCTTGGAACATTTGATAGTGAAGAGGATGCTGCTTTAGCTTATATATGA 321 0.3645 MDMQQDPSDISFESFGNYNYLSFDMVDFSSSSQTLPNNKTKQSMLKSLSEAKEVLQKNKMEKSSYIGVRKRPWGKFAAEIRDTTRGGRRVWLGTFDSEEDAALAYI 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02710 106 Pfam AP2 domain 64 106 IPR001471 GO:0003700|GO:0006355
Tsu01g02710 106 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 15 26 105 - -
Tsu01g02710 106 PRINTS Ethylene responsive element binding protein signature 65 76 IPR001471 GO:0003700|GO:0006355
Tsu01g02710 106 PRINTS Ethylene responsive element binding protein signature 88 104 IPR001471 GO:0003700|GO:0006355
Tsu01g02710 106 PANTHER DNA-BINDING DOMAIN 26 105 IPR044808 GO:0003700|GO:0009873
Tsu01g02710 106 SMART rav1_2 64 105 IPR001471 GO:0003700|GO:0006355
Tsu01g02710 106 Gene3D AP2/ERF domain 64 106 IPR036955 GO:0003700|GO:0006355
Tsu01g02710 106 CDD AP2 63 105 IPR001471 GO:0003700|GO:0006355
Tsu01g02710 106 SUPERFAMILY DNA-binding domain 63 105 IPR016177 GO:0003677
Tsu01g02710 106 ProSiteProfiles AP2/ERF domain profile. 64 106 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02710 Tsu-Chr1 30823784 30824104 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02710 61 105 AP2-EREBP Transcription Factor Family AT2G31230 80.000 2.01e-20 80.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tsu01g02710 AP2 4.6e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02710 K14516 - gmx:100527364 112.464
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g02710 01 30823784 30824104 Tsu07g03664 07 42866364 42866963 PCT