Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02706 ATGTTGCAACAAGATCCTACTAATAATATTCACTTTCATCATGATTCTCTTTCATTCGACATGGTTGACCAACAACAAGGACAAACAAATAATGAACCAAATCAATTAGTGAAGAATATTTCTGAAGCTAAAGAAGAAAGATCATACATAGGTGTGAGAAAAAGACCTTGGGGGAAATTTGCTGCTGAAATCAGAGATACAACAAGAGGTGGAAGAAGAGTTTGGCTTGGAACATTTGAGAGTGCTGAAGATGCTGCTTTAGCTTATGATCAAGCTGCATTTTCAATGAGAGGTAATAATGCTGTCATCAATTTTTCTGTCCAAAAGGTCAAAGAATCTTTGCAAGAGATTCAATATGATTGCAGAAAAGGGTCTTCACCTGCACTTGCACTCAAGGAGAGACACTATAACCAAAGAAAGTTAACATCAAAAGGTTTAAAGAATAACAAAGCAGGGAAACAAGATCAATCAGAtggatcatcatcatcatcatcaacaagtgTTTTGGTGTTAGAAGATTTGGGAGTTGAATATCTTGAGGAACTTCTAAGTATATCAGATCATGAAAGTACCAGCACCACCAGCTATTTCTAA 594 0.3418 MLQQDPTNNIHFHHDSLSFDMVDQQQGQTNNEPNQLVKNISEAKEERSYIGVRKRPWGKFAAEIRDTTRGGRRVWLGTFESAEDAALAYDQAAFSMRGNNAVINFSVQKVKESLQEIQYDCRKGSSPALALKERHYNQRKLTSKGLKNNKAGKQDQSDGSSSSSSTSVLVLEDLGVEYLEELLSISDHESTSTTSYF 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02706 197 MobiDBLite consensus disorder prediction 141 166 - -
Tsu01g02706 197 CDD AP2 49 105 IPR001471 GO:0003700|GO:0006355
Tsu01g02706 197 Gene3D AP2/ERF domain 48 108 IPR036955 GO:0003700|GO:0006355
Tsu01g02706 197 SUPERFAMILY DNA-binding domain 49 107 IPR016177 GO:0003677
Tsu01g02706 197 SMART rav1_2 48 112 IPR001471 GO:0003700|GO:0006355
Tsu01g02706 197 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 15 15 184 - -
Tsu01g02706 197 PRINTS Ethylene responsive element binding protein signature 49 60 IPR001471 GO:0003700|GO:0006355
Tsu01g02706 197 PRINTS Ethylene responsive element binding protein signature 72 88 IPR001471 GO:0003700|GO:0006355
Tsu01g02706 197 MobiDBLite consensus disorder prediction 142 166 - -
Tsu01g02706 197 ProSiteProfiles AP2/ERF domain profile. 48 106 IPR001471 GO:0003700|GO:0006355
Tsu01g02706 197 Pfam AP2 domain 49 98 IPR001471 GO:0003700|GO:0006355
Tsu01g02706 197 PANTHER DNA-BINDING DOMAIN 15 184 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02706 Tsu-Chr1 30720164 30720757 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02706 19 191 AP2-EREBP Transcription Factor Family AT3G23240 50.568 1.42e-55 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Tsu01g02706 AP2 2.6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02706 K14516 - gmx:100812569 207.223