Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02690 ATGGCAATGAACAAGAACCAATTCTACAAGCTTGGATATCAAGCTCTCCCACCTATCATAACTCAAGCTAGTACACTTCATCACCACCCTCCTCAACCTGTTTCAGACTATGCTTTTCCAATATTTGCAATTGTTGTTCTCAGCATCATGGCTACCATTTTGTTGCTCCTTAGCTACTTCACTTTTTTAACCAAATGCTGCTCAAACTGGAATCAAGTTAACCCAATGAGATGGACTTCAGTACTTCGAGCTCGACAGAATGAGGAAGATCACTTCATAGCATTGTCTCCTACGATGTGGAACCGAGGACTAGACGAAGCAGTCATCAGAGAAATCCCAAGTTTTCAGTTTATAAAACAAGAATGTGAGGATCAAAGTGTGTATGGCTGTGTGGTTTGTTTGACAGAGTTTCAAGAACAGGATGTGATAAAAATTCTCCCCAATTGCAACCATGCTTTTCACTTGGATTGCATTGATATTTGGCTTCAAACCAATTCTAATTGTCCTCTTTGTAGATCAAGCATTTCAGGCAATACAACAAACACTTCATTTGACATTATCATAGCACCAAGTTCTTCTCCTCAGAATTCTCAGTTGCTCTCTAACTTAGGCAATGATGAAGATTTTGTGGTCATTGAATTAGGTGGAGGAGAAAATGAGGTTCAACAAGAAAGAAACTATTCAAGGGGAAGCATAGTACATAGTAGAAATTATCACTCTACAAGGAAAATTAAACCAATTAAGTGTCACCATGTTTCCATCATGGGAGATGAGTGCATTGATATCATCAGAAAGAAAGATGACACGTTTTCGATTCAGCCAATTCGAAGATCTTTCTCAATGGATTCTGCAAATGATAGACAAGTTTTTATGGATGTTCAAGCCATTATACAACGAAATAGGCACAACCTTTTTGTTATGGAAAGGAATCCAAAAATGCATTCCTTCCCTTTGGTGAATGATGTTTAA 969 0.3798 MAMNKNQFYKLGYQALPPIITQASTLHHHPPQPVSDYAFPIFAIVVLSIMATILLLLSYFTFLTKCCSNWNQVNPMRWTSVLRARQNEEDHFIALSPTMWNRGLDEAVIREIPSFQFIKQECEDQSVYGCVVCLTEFQEQDVIKILPNCNHAFHLDCIDIWLQTNSNCPLCRSSISGNTTNTSFDIIIAPSSSPQNSQLLSNLGNDEDFVVIELGGGENEVQQERNYSRGSIVHSRNYHSTRKIKPIKCHHVSIMGDECIDIIRKKDDTFSIQPIRRSFSMDSANDRQVFMDVQAIIQRNRHNLFVMERNPKMHSFPLVNDV 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02690 322 PANTHER RING-H2 FINGER PROTEIN ATL16 1 304 IPR044600 GO:0016567|GO:0016740
Tsu01g02690 322 SMART ring_2 130 171 IPR001841 -
Tsu01g02690 322 CDD RING-H2_PA-TM-RING 130 172 - -
Tsu01g02690 322 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 177 IPR013083 -
Tsu01g02690 322 ProSiteProfiles Zinc finger RING-type profile. 130 172 IPR001841 -
Tsu01g02690 322 Pfam Ring finger domain 130 172 IPR001841 -
Tsu01g02690 322 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 304 - -
Tsu01g02690 322 SUPERFAMILY RING/U-box 129 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02690 Tsu-Chr1 30527040 30528042 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02690 30 302 C3H Transcription Factor Family AT1G04360 44.268 2.54e-69 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02690 K19041 - gmx:100809883 433.335