Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02688 ATGAGAAATTCGTCAGAAACACCTTCTCCTTCTTCATACAATACCAGATCGAAGAAACCCCAACTTCGAAGCTCAAAATCCCTATTCCAAGATCCCATTTGCTCAAAGACACCGGAAAAATCATCGGAGAAACCATCTCAGAGGACACGCAACCGTGGTGTTGCACTCTCTATATCGGATATTAGAAAAGTTGCTAAGGGTCTTCAAGATCAGAAGCAAACCAATGAAACGACGCCGTTGAAGGGTAGAACCGCTAGAAGGCAAATCGCATTGGCTTCTCCTCTTAAGAGTAGTAAATCGGCTGATGGATTATTGAAGCTTCCTGAAAAGTATGAGAATTTGGGCGAGTTTTTTGATAGTTTGGATAGTTCGATTCGGTTGTTGCGAATGAAAGGATCGATGACTTCGTTTACTAATATTAGGCCCAAGATTGAAACTTTAACTGATAGGAGATTTACTCATAGTCATCTGGCTCAATTGAAGTTTATATTGCCCGAGGCGATTGCTATTAAGAAATTATTAGTGTTTGATGAAAGAACAAGTTGTATGAAGCCAGATCTTCATGTTACTATAAACCCTGATGCAGTAGAATTTGATGCTAAGTTTAAATCTGAATCTGGGACTATGTCTCTGAGAAAGTTATTTCGAGAACGGCTCAAAGATTTTTGGAAATCTCATCCAGAGGGTTATGAAATTCCAGAGGAAATACTGCCTGATCCATTCAGTCGTCCAAAGCACGATCCTCTTTTACACATGTTGAAAACCCCCTCATCACTGTCTGCAGTGACATTATCTGATGCATGTGCTTCTCATCCATCAACAATGTTGTCAACTAGTGACATTGCAGATAATACAGACCCTGCTAACTCAGAAATATATGTATCAGTGCCCGCTGAGACATCAGTTGAAGCTCTTAACCAGAAGCCCGCAGTTGCTTCTCATATGCCTCAATCTTTCAGAAGACGGTTTTCTCAGAAATTGAAGGAAAATGTACACCCAAAATTTCAATCAGATTCCTTCCAACCCTTATCCGTGCCAGTTTCAGAGTCAAGTTTGAAGATAAGTCCCACTTCTGAGGTTGCTAAATCCCATCAGAAACCCAACTCATCTGAGTTGGTTTCAGAATTATCCAGTAATGAAGCATGTCCTACAATTCATGGTTCTTCAGAATGCTTTGTACCAGCCGGTGTTACACCAGCTACACCTAGCAAAGCCGTTGAGTTTGCAGAAAGCAAAGATGGCTCCATGAAAAGCATTGAAGCTATGTCGACTCCAGCTAGATTTGTGTCTACTCCATCCAGGCTGATGACAGCCACACCTGCATTGAAGCCACCTAAAAGGCATTTTATGAGCCCGGATGACAACTCTACCAACTCACCAGACAAGTTGGTTAAGCGCCCACCTAGTTCAAGGTCATTAAAATTTAACACTCCGATGAAAAATGAAGATGCTGCTGGCGGTTTGTCAATTGGTGACGACATTTTAGATATCCTCCCAGATAATATTCTCCATTCGATTatggaaaaagaaagaatagcAATGGAGGAAAGGGATCCAGCTATCTCCCAAGCTAAGAAACGGAAAAAGATTATTGCGAGCCTCCCTAAGCTCTTTAACATGATTCACATGATGTTTCATTCAATAAACCGTTCTGTTATCACAAAAGAGGAGTTGATGAGCAAGATAATTTCAAGCCACCGTGATATCGTTGATAGAAGTGAAGTTGAAGAACAATTCCATTTGTTGTTAGAATTAGTTCCTGAATGGATTTCTGAGAAGTTGGCCTCTAGTGGAGATATGCTAGTCTCCGTAAATAAAATGTTGAACCCTGAATCCTTAAGAGCATCACTTGAAGAAGCAAAATGA 1866 0.4035 MRNSSETPSPSSYNTRSKKPQLRSSKSLFQDPICSKTPEKSSEKPSQRTRNRGVALSISDIRKVAKGLQDQKQTNETTPLKGRTARRQIALASPLKSSKSADGLLKLPEKYENLGEFFDSLDSSIRLLRMKGSMTSFTNIRPKIETLTDRRFTHSHLAQLKFILPEAIAIKKLLVFDERTSCMKPDLHVTINPDAVEFDAKFKSESGTMSLRKLFRERLKDFWKSHPEGYEIPEEILPDPFSRPKHDPLLHMLKTPSSLSAVTLSDACASHPSTMLSTSDIADNTDPANSEIYVSVPAETSVEALNQKPAVASHMPQSFRRRFSQKLKENVHPKFQSDSFQPLSVPVSESSLKISPTSEVAKSHQKPNSSELVSELSSNEACPTIHGSSECFVPAGVTPATPSKAVEFAESKDGSMKSIEAMSTPARFVSTPSRLMTATPALKPPKRHFMSPDDNSTNSPDKLVKRPPSSRSLKFNTPMKNEDAAGGLSIGDDILDILPDNILHSIMEKERIAMEERDPAISQAKKRKKIIASLPKLFNMIHMMFHSINRSVITKEELMSKIISSHRDIVDRSEVEEQFHLLLELVPEWISEKLASSGDMLVSVNKMLNPESLRASLEEAK 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02688 621 Pfam DNA replication factor CDT1 like 107 220 IPR014939 -
Tsu01g02688 621 Gene3D - 492 621 IPR038090 -
Tsu01g02688 621 MobiDBLite consensus disorder prediction 442 479 - -
Tsu01g02688 621 MobiDBLite consensus disorder prediction 1 57 - -
Tsu01g02688 621 MobiDBLite consensus disorder prediction 1 36 - -
Tsu01g02688 621 CDD Cdt1_c 492 618 IPR032054 -
Tsu01g02688 621 SMART CDT1_2 107 239 IPR014939 -
Tsu01g02688 621 MobiDBLite consensus disorder prediction 451 477 - -
Tsu01g02688 621 Pfam DNA replication factor Cdt1 C-terminal domain 502 593 IPR032054 -
Tsu01g02688 621 PANTHER DNA REPLICATION FACTOR CDT1 15 621 IPR045173 GO:0003677|GO:0030174|GO:0071163
Tsu01g02688 621 SUPERFAMILY "Winged helix" DNA-binding domain 105 241 IPR036390 -
Tsu01g02688 621 CDD Cdt1_m 94 264 IPR014939 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02688 Tsu-Chr1 30511827 30515014 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02688 423 619 Core DNA Replication Machinery Family AT2G31270 50.000 1.04e-53 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02688 K10727 - gmx:100778818 567.77