Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02683 ATGGCTGGTTCTAGTTCTGTTTCTGGTTCTCCTTGTGGAGCTTGCAAATTCTTGAGAAGAAAATGTATAATAGGTTGTgtttttgcaccttattttAGTCATGAACAAGGTGCTACACATTTTGCAGCCATTCATAAGGTTTTTGGTGCAAGCAATGTCTCAAAACTTCTTGCTCATCTCCCTGTAAGTGATCGTTGCGAAGCCGCGGTTACAATCTCTTATGAAGCTCAAGCTAGACTTCAAGATCCTATTTATGGCTGTGTTTCCCATATTTTTGCCCTCCAACAACAGgttGTCAATTTACAAACACAACTAGCTTATCTCAAAGAACAAGCATCACAAACTTGTGTCAACAATGCATCAACTAATGAAAGCCCTAATGAAAAATATTCTGCTACTCTTACTCCTCCCCAAGATCTTCAAAGTTTGTTCTATGTGGAAAATTCCAACAGTCACCAACTTGACCCAGAATTTCATACAAATAACTTGTCTAATATTTCCTCAACAACACAATATTATGTTAACAACAATAATCTCATGGATCTAAACCCTATGAGGAATTATGAAAATTCCAGAGGAGTCATGGAAGAAAATAGTTCATTTTCTAGCTTTGAAAATGAATTTGATGACTTACATTCAGTGGCTTTTGGATATAGTTGA 660 0.3545 MAGSSSVSGSPCGACKFLRRKCIIGCVFAPYFSHEQGATHFAAIHKVFGASNVSKLLAHLPVSDRCEAAVTISYEAQARLQDPIYGCVSHIFALQQQVVNLQTQLAYLKEQASQTCVNNASTNESPNEKYSATLTPPQDLQSLFYVENSNSHQLDPEFHTNNLSNISSTTQYYVNNNNLMDLNPMRNYENSRGVMEENSSFSSFENEFDDLHSVAFGYS 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02683 219 Coils Coil 91 111 - -
Tsu01g02683 219 ProSiteProfiles LOB domain profile. 10 112 IPR004883 -
Tsu01g02683 219 PANTHER LOB DOMAIN-CONTAINING PROTEIN 17-RELATED 3 216 - -
Tsu01g02683 219 Pfam Lateral organ boundaries (LOB) domain 11 109 IPR004883 -
Tsu01g02683 219 PANTHER LOB DOMAIN CONTAINING PROTEIN 3 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02683 Tsu-Chr1 30440468 30441421 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02683 11 145 AS2 family AT3G58190 71.739 1.16e-69 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Tsu01g02683 LOB 1.3e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02683 K13945 - gmx:100776678 269.626