Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02678 ATGGAATTTAGTTACATCCAAGAAGATTCAAAGAGCTCGAGTGACGAAAACATTGATCGATCATCCGATCAAAACAACGAAGATGATCATAATCGCGACATGGGAATTGGTAGATCTTATGAGTGTGTATTTTGCAAAAGAGGTTTCACAACTGCTCAAGCTTTAGGTGGACACATGAACATACATAGAAAAGATAGAgcaaataataacaaaagtgttACCAAAACTAATTATGCTCCTAGTTCAAGCAAATTAGTAGTTGATCATGATGACTATGGTAATCATCTTGGATTTTATTCAGCAATTAATCCAAGTCATCTTGCAAGAGGTGGTTATTATTCATCAACAACTAATCCTCCTGAGGTAGATTCTCTTAATtatcatcaaatatattttccttCACATCATGTGCAATATAGTGAGATGTTATGTGTTGAAAATCAAAGAATGTTTGGACAAGAGTGGAGTGGTTTGAGTTTGTATACAAATCCATTAAGTAAAGACAAGATAGAAAACAACAATGGAGTGGATGAATTGGATTTGGAGCTTAGACTTGGTCATTATCCATAG 570 0.3263 MEFSYIQEDSKSSSDENIDRSSDQNNEDDHNRDMGIGRSYECVFCKRGFTTAQALGGHMNIHRKDRANNNKSVTKTNYAPSSSKLVVDHDDYGNHLGFYSAINPSHLARGGYYSSTTNPPEVDSLNYHQIYFPSHHVQYSEMLCVENQRMFGQEWSGLSLYTNPLSKDKIENNNGVDELDLELRLGHYP 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02678 189 MobiDBLite consensus disorder prediction 12 33 - -
Tsu01g02678 189 Pfam C2H2-type zinc finger 40 64 - -
Tsu01g02678 189 ProSitePatterns Zinc finger C2H2 type domain signature. 42 62 IPR013087 -
Tsu01g02678 189 ProSiteProfiles Zinc finger C2H2 type domain profile. 40 67 IPR013087 -
Tsu01g02678 189 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 7 189 - -
Tsu01g02678 189 Gene3D Classic Zinc Finger 16 92 - -
Tsu01g02678 189 PANTHER OS07G0101800 PROTEIN 7 189 - -
Tsu01g02678 189 SUPERFAMILY beta-beta-alpha zinc fingers 38 66 IPR036236 -
Tsu01g02678 189 MobiDBLite consensus disorder prediction 1 33 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02678 Tsu-Chr1 30395648 30396217 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02678 38 189 C2H2 Transcription Factor Family AT4G17810 34.839 8.78e-16 69.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tsu01g02678 zf-C2H2_6 1.6e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02678 - - gmx:102670484 213.772