Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02674 ATGGAAGGAAACTATCTGAATAGAAACACAACAACTACTCATAGAGATCATggtcattatcatcatcataacTTGGGATTTGAGGAGCATACATCATGGCCATCAAGAAACTATGCTTGTAGTTTTTGCAAAAGAGAGTTTAGGTCAGCTCAAGCTTTAGGTGGACATATGAATGTTCATAGAAGAGATAGGGCAAGATTAAGATCGTCATTAATATCTTCTTGGGTTAATTCTGATCATTgccctaataataatattaataaaccTAACCCAACTATTACTACACAATCTCCTTTATCTAATGATGAGATTTTCAATGTTTCACACCCTTATCTcactttatcttcttcttcacctTCCTTAGGTCATACTAGCCATGATGATAAGAAACCAAGACTCACACCTTCTCTATCTCTTCCCCTTTTGAATCCTCAAAGAAGTCAAATTATGAAGAGCTATGAAGATGTGAAGAAGCATAATGTTTTGATGAATAGTGAGCAAAACATTACATTGGATTTAGGAATAGGGTTGCTTGAACATCAAAAGGAAAAGTTAGATTTGGAGCTTCGACTTTAG 576 0.3125 MEGNYLNRNTTTTHRDHGHYHHHNLGFEEHTSWPSRNYACSFCKREFRSAQALGGHMNVHRRDRARLRSSLISSWVNSDHCPNNNINKPNPTITTQSPLSNDEIFNVSHPYLTLSSSSPSLGHTSHDDKKPRLTPSLSLPLLNPQRSQIMKSYEDVKKHNVLMNSEQNITLDLGIGLLEHQKEKLDLELRL 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02674 191 Gene3D Classic Zinc Finger 11 85 - -
Tsu01g02674 191 SUPERFAMILY beta-beta-alpha zinc fingers 35 64 IPR036236 -
Tsu01g02674 191 ProSiteProfiles Zinc finger C2H2 type domain profile. 38 65 IPR013087 -
Tsu01g02674 191 PANTHER OS07G0101800 PROTEIN 13 191 - -
Tsu01g02674 191 PANTHER TRANSCRIPTIONAL REGULATOR SUPERMAN 13 191 - -
Tsu01g02674 191 ProSitePatterns Zinc finger C2H2 type domain signature. 40 60 IPR013087 -
Tsu01g02674 191 MobiDBLite consensus disorder prediction 80 100 - -
Tsu01g02674 191 MobiDBLite consensus disorder prediction 116 139 - -
Tsu01g02674 191 Pfam C2H2-type zinc finger 38 62 - -
Tsu01g02674 191 SMART c2h2final6 38 60 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02674 Tsu-Chr1 30312062 30312637 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02674 21 191 C2H2 Transcription Factor Family AT3G23130 40.000 3.09e-22 87.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02674 - - mtr:MTR_1g070265 252.677