Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02666 ATGGCGGATGTTGAACCCGAGGTAGCAGCACAAGGAGTGCCAAAGAAGCGAACATTCAAGAAGTTCAGTTTCCGTGGAGTTGATCTCGATGCTCTCTTGGATATGTCCACTGATGAACTCGTCAAGCTTTTCTCTGCTCGTGCTCGTAGAAGGTTTCAACGTGGTTTGACCCGCAAGCCTATGGCCCTCATCAAGAAGCTCCGCAAGGCGAAACGTGAGGCACCACCAGGTGAGAAGCCGGAACCAGTGAGGACTCACCTCCGCAACATGATCATCGTGCCTGAGATGATTGGTAGCATCATTGGTGTCTACAATGGAAAGACCTTCAATCAGGTTGAAATTAAACCTGAAATGATTGGTCACTATCTTGCTGAATTCTCAATCTCTTACAAGCCTGTTAAGCACGGTAGGCCTGGTATTGGTGCTACTCACTCTTCAAGGTTTATTCCTCTTAAATGA 459 0.4749 MADVEPEVAAQGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFSARARRRFQRGLTRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02666 152 PIRSF RPS19p_RPS19a_RPS15e_RPS19o 8 152 IPR002222 GO:0003735|GO:0005840|GO:0006412
Tsu01g02666 152 SUPERFAMILY Ribosomal protein S19 55 136 IPR023575 GO:0003735|GO:0005840|GO:0006412
Tsu01g02666 152 Gene3D 30s Ribosomal Protein S19; Chain A 9 152 IPR023575 GO:0003735|GO:0005840|GO:0006412
Tsu01g02666 152 TIGRFAM uS19_arch: ribosomal protein uS19 19 152 IPR005713 GO:0003735|GO:0006412|GO:0015935
Tsu01g02666 152 Pfam Ribosomal protein S19 50 135 IPR002222 GO:0003735|GO:0005840|GO:0006412
Tsu01g02666 152 PRINTS Ribosomal protein S19 family signature 85 104 IPR002222 GO:0003735|GO:0005840|GO:0006412
Tsu01g02666 152 PRINTS Ribosomal protein S19 family signature 105 117 IPR002222 GO:0003735|GO:0005840|GO:0006412
Tsu01g02666 152 PRINTS Ribosomal protein S19 family signature 117 132 IPR002222 GO:0003735|GO:0005840|GO:0006412
Tsu01g02666 152 ProSitePatterns Ribosomal protein S19 signature. 105 129 IPR020934 GO:0003723
Tsu01g02666 152 PANTHER RIBOSOMAL PROTEIN S19P FAMILY MEMBER 2 152 IPR002222 GO:0003735|GO:0005840|GO:0006412
Tsu01g02666 152 PANTHER 40S RIBOSOMAL PROTEIN S15-1-RELATED 2 152 - -
Tsu01g02666 152 Hamap 30S ribosomal protein S19 [rpsS]. 48 141 IPR002222 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02666 Tsu-Chr1 30174122 30176215 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02666 1 152 Cytoplasmic Ribosomal Protein Gene Family AT5G09500 88.816 1.73e-95 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02666 K02958 - mnt:21407300 294.278