Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu01g02656 ATGGTGTTTGATGAAACTGAACTGCGGTTGGGATTGCCTGGAAATATTATTGGAGCAGCTGGTAAAGTAACAGAAGTAGTAGTAGCAAGGAAGAGAGGTTTCTCTGAAACTGAGAGTGAAACTGATCAAACAACTACTGTAGATTTGAAGCTTAATCTCTCTTCCAAGGAAGGAACAGCAGATCCAGTTGAGAAGAATAAGGAAAAGACTCTTCTGCTCTCTGATTCTGGTGTCAAGCCACCTGCTAAggcaCAAGTGGTGGGTTGGCCACCAGTGCGGTCTTTCCGGAAGAACATGTTTGCAGCCCAAAAGAGCAACAAAGGATTAGAGGAAAGTGAGAAGAAGAGCAACACTAATCCAATAAGCTTTGTGAAAGTTAGCATGGATGGTGCACCTTACCTCCGCAAAGTAGATCTCAAGATGTACAAGAGTTACCCAGAGCTCTCAGATGCCTTAGCCAAAATGTTTAACCTCTTTACCAATGgaaATTGTGAATCCCAAGGCATTAAGGATTTCATGAAGGAGAGTAAGGTGATGGATCTATTGAACAGCTCTGACTATGTCCCAACTTATGAAGACAAGGATGGTGACTGGATGCTTGTCGGTGATGTACCATGGGAGATGTTCATCGAATCATGCAAGCGTTTACGTATCATGAAAGGAAAAGAAGCTGTTGGACTCGCGCCAAGAGCTATGGAAAAATGCAAGAACATGAGCTAG 720 0.4278 MVFDETELRLGLPGNIIGAAGKVTEVVVARKRGFSETESETDQTTTVDLKLNLSSKEGTADPVEKNKEKTLLLSDSGVKPPAKAQVVGWPPVRSFRKNMFAAQKSNKGLEESEKKSNTNPISFVKVSMDGAPYLRKVDLKMYKSYPELSDALAKMFNLFTNGNCESQGIKDFMKESKVMDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFIESCKRLRIMKGKEAVGLAPRAMEKCKNMS 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu01g02656 239 ProSiteProfiles PB1 domain profile. 121 221 IPR000270 GO:0005515
Tsu01g02656 239 Pfam AUX/IAA family 5 230 IPR033389 -
Tsu01g02656 239 SUPERFAMILY CAD & PB1 domains 111 220 - -
Tsu01g02656 239 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 1 232 IPR003311 GO:0005634|GO:0006355
Tsu01g02656 239 Gene3D - 97 232 - -
Tsu01g02656 239 PANTHER AUXIN-INDUCED PROTEIN AUX28 1 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu01g02656 Tsu-Chr1 29931387 29935665 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu01g02656 112 224 B3 DNA Binding Superfamily AT3G61830 34.513 1.69e-09 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Tsu01g02656 AUX_IAA 6.7e-85 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu01g02656 K14484 - gmx:100780214 333.954
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu07g03640 07 42620477 42621919 Tsu01g02656 01 29931387 29935665 PCT